-
Notifications
You must be signed in to change notification settings - Fork 7
Pull requests: seqeralabs/RustQC
Author
Label
Projects
Milestones
Reviews
Assignee
Sort
Pull requests list
feat(rna): RSeQC geneBody_coverage and read_GC
#161
opened Aug 29, 2026 by
BenjaminDEMAILLE
Loading…
feat(protein): add the protein subcommand and its sequence mode
#158
opened Aug 28, 2026 by
BenjaminDEMAILLE
Loading…
feat(dna): Qualimap bamqc, plus the DNA documentation pages
#156
opened Aug 28, 2026 by
BenjaminDEMAILLE
Loading…
feat(dna): targeted mode, CollectHsMetrics and CollectGcBiasMetrics
#155
opened Aug 28, 2026 by
BenjaminDEMAILLE
Loading…
feat(dna): Picard CollectWgsMetrics and CollectInsertSizeMetrics
#154
opened Aug 28, 2026 by
BenjaminDEMAILLE
Loading…
feat: add the
rustqc dna subcommand (depth of coverage, samtools, preseq)
#153
opened Aug 28, 2026 by
BenjaminDEMAILLE
Loading…
refactor: extract assay-agnostic analyses into src/common/
#152
opened Aug 28, 2026 by
BenjaminDEMAILLE
Loading…
chore: update actions/setup-node action to v6.5.0
renovate-actions
#150
opened Aug 24, 2026 by
seqeralabs-renovate
Bot
Loading…
1 task
chore: update actions/checkout action to v6.1.0
renovate-actions
#149
opened Aug 24, 2026 by
seqeralabs-renovate
Bot
Loading…
1 task
chore: update swatinem/rust-cache action to v2.9.2
renovate-actions
#148
opened Aug 24, 2026 by
seqeralabs-renovate
Bot
Loading…
1 task
chore: update dtolnay/rust-toolchain digest to 6c977a6
renovate-actions
#147
opened Aug 24, 2026 by
seqeralabs-renovate
Bot
Loading…
1 task
ci: extend Dependabot to cargo, npm and docker
#146
opened Aug 23, 2026 by
BenjaminDEMAILLE
Loading…
Migrate CLI parsing from clap to usage-rs
#145
opened Aug 23, 2026 by
edmundmiller
Contributor
Loading…
build(deps): update openssl-sys to 0.9.117 for OpenSSL 4 support
#144
opened Aug 23, 2026 by
BenjaminDEMAILLE
Loading…
fix: make dupRadar and Qualimap outputs reproducible run-to-run
#142
opened Aug 14, 2026 by
BenjaminDEMAILLE
Loading…
perf: parse GTF without per-line allocations (1.88x)
#140
opened Aug 14, 2026 by
BenjaminDEMAILLE
Loading…
perf: buffer all output file writers (2.4x wall clock)
#139
opened Aug 13, 2026 by
BenjaminDEMAILLE
Loading…
perf: switch flate2 to the zlib-rs backend (2.3x faster gzip)
#138
opened Aug 13, 2026 by
BenjaminDEMAILLE
Loading…
perf: use mimalloc as the global allocator in the binary
#137
opened Aug 13, 2026 by
BenjaminDEMAILLE
Loading…
feat: add align subcommand for single-pass DNA alignment QC
#136
opened Aug 13, 2026 by
BenjaminDEMAILLE
Loading…
feat: add bamqc subcommand for generic genomic BAM/CRAM QC
#135
opened Aug 13, 2026 by
BenjaminDEMAILLE
Loading…
feat: add geneBody_coverage and read_GC RSeQC tools
#134
opened Aug 13, 2026 by
BenjaminDEMAILLE
Loading…
feat: BED-interval rRNA quantification (split_bam) and featureCounts -M/-O
#133
opened Aug 13, 2026 by
BenjaminDEMAILLE
Loading…
Previous Next
ProTip!
What’s not been updated in a month: updated:<2026-07-29.