fix: remove duplicate packages/bot, fix remaining build breaks - #944

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, actions/setup-node@v4, actions/upload-artifact@v4, github/codeql-action/upload-sarif@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

Calculated fingerprint of badad45a110c37d:1 for file packages/cli/src/commands/secrets.ts line 176, but found existing inconsistent fingerprint value secret-generic-credential:packages/cli/src/commands/secrets.ts:176

Calculated fingerprint of 262c090124b84ba8:1 for file packages/captcha/captchasolver/src/index.ts line 34, but found existing inconsistent fingerprint value secret-generic-credential:packages/captcha/captchasolver/src/index.ts:34

Calculated fingerprint of 85eeb942e743beeb:1 for file packages/bridges/matrix/src/index.ts line 59, but found existing inconsistent fingerprint value secret-generic-credential:packages/bridges/matrix/src/index.ts:59

Calculated fingerprint of 35d3b1c7a77a5be:1 for file packages/bridges/matrix/src/index.ts line 58, but found existing inconsistent fingerprint value secret-generic-credential:packages/bridges/matrix/src/index.ts:58

Calculated fingerprint of 1d231d1f19c961a2:1 for file packages/ai/amazon-bedrock/src/index.ts line 11, but found existing inconsistent fingerprint value secret-generic-credential:packages/ai/amazon-bedrock/src/index.ts:11

Calculated fingerprint of e5920fb73e46c5c6:1 for file packages/ai/amazon-bedrock/src/index.ts line 10, but found existing inconsistent fingerprint value secret-generic-credential:packages/ai/amazon-bedrock/src/index.ts:10

Calculated fingerprint of c9a84908c5ed7e48:1 for file packages/ai/amazon-bedrock/src/index.ts line 9, but found existing inconsistent fingerprint value secret-generic-credential:packages/ai/amazon-bedrock/src/index.ts:9

Calculated fingerprint of 157f8bd1d8eb4476:1 for file packages/affiliates/sovrn/src/index.ts line 28, but found existing inconsistent fingerprint value secret-generic-api-key:packages/affiliates/sovrn/src/index.ts:28

Calculated fingerprint of 480206571fdfbb6b:1 for file boilerplates/perry-hono-supabase/apps/api/package.json line 17, but found existing inconsistent fingerprint value manifest-typosquat:boilerplates/perry-hono-supabase/apps/api/package.json:17