fix: improve probabilistic SEG legend usability (#409)

.github/workflows/container-tests.yml

@@ -27,8 +27,20 @@ jobs:
 
       - name: Test web page
         run: |
-          curl -sI http://localhost:8008/ | grep -o '200 OK'
-          curl -s http://localhost:8008/ | grep -o '<title>Slim</title>'
+          # Poll: compose returns as soon as the container process starts,
+          # before nginx is listening (same flake as a bare curl right after up).
+          for i in $(seq 1 30); do
+            if curl -sI http://localhost:8008/ | grep -q '200 OK' \
+              && curl -s http://localhost:8008/ | grep -q '<title>Slim</title>'; then
+              echo "Slim web page ready"
+              exit 0
+            fi
+            sleep 2
+          done
+          echo "Slim web page did not become ready in time"
+          docker compose ps || true
+          docker compose logs --tail=80 app || true
+          exit 1
 
       - name: Test DICOMweb service
         run: |

.github/workflows/deploy-to-firebase.yml

@@ -36,7 +36,9 @@
           cache: pnpm
 
       - name: Install dependencies
-        run: pnpm install --frozen-lockfile --ignore-scripts
+        # Dependency build scripts are gated by allowBuilds in pnpm-workspace.yaml.
+        # The git-hosted dicom-microscopy-viewer needs its prepare script to build dist/.
+        run: pnpm install --frozen-lockfile
 
       - name: Build
         run: REACT_APP_CONFIG=preview PUBLIC_URL=/ pnpm run build

.github/workflows/deploy-to-github-pages.yml

@@ -35,7 +35,9 @@
           cache: pnpm
 
       - name: Install dependencies
-        run: pnpm install --frozen-lockfile --ignore-scripts
+        # Dependency build scripts are gated by allowBuilds in pnpm-workspace.yaml.
+        # The git-hosted dicom-microscopy-viewer needs its prepare script to build dist/.
+        run: pnpm install --frozen-lockfile
 
       - name: Build
         run: pnpm run predeploy

.github/workflows/unit-tests.yml

@@ -32,7 +32,9 @@
           cache: pnpm
 
       - name: Install dependencies
-        run: pnpm install --frozen-lockfile --ignore-scripts
+        # Dependency build scripts are gated by allowBuilds in pnpm-workspace.yaml.
+        # The git-hosted dicom-microscopy-viewer needs its prepare script to build dist/.
+        run: pnpm install --frozen-lockfile
 
       - name: Lint
         run: pnpm run lint

README.md

@@ -93,6 +93,8 @@ _Slim_ also supports interactive visualization of image annotations and analysis
 - [DICOM Segmentation](https://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_A.51.html) instances that contain binary or fractional segmentation masks
 - [DICOM Parametric Map](https://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_A.75.html) instances that contain saliency maps, attention maps, class activation maps, and similar derived images
 
+Fractional segmentations and parametric maps show an in-viewport color legend when at least one overlay is visible. The legend is collapsible and its per-item visibility toggles stay in sync with the switches in the right-hand panel.
+
 | | DICOM IOD |
 | :-: | :-------- |
 | <img src="docs/screenshots/IDC_CPTAC_C3N-01016-22_segmentation.png" alt="IDC CPTAC Segmentation" width="350"> | Segmentation |

package.json

@@ -41,7 +41,7 @@
     "classnames": "^2.2.6",
     "dcmjs": "^0.35.0",
     "detect-browser": "^5.2.1",
-    "dicom-microscopy-viewer": "^0.48.22",
+    "dicom-microscopy-viewer": "github:ImagingDataCommons/dicom-microscopy-viewer#03b4732f05fb7d02b6247e2d75e69c73ab5c88ff",
     "dicomweb-client": "0.10.3",
     "oidc-client": "^1.11.5",
     "ol": "^10.7.0",

pnpm-workspace.yaml

@@ -4,7 +4,13 @@ strictPeerDependencies: false
 allowBuilds:
   core-js: true
   core-js-pure: true
+  # Allow the git-hosted dicom-microscopy-viewer to run its prepare script,
+  # which builds dist/ when installed from a commit tarball. pnpm matches
+  # git-hosted packages by their exact tarball URL, so this entry must be
+  # updated whenever the dependency pin in package.json changes.
   dicom-microscopy-viewer: true
+  'dicom-microscopy-viewer@https://codeload.github.com/ImagingDataCommons/dicom-microscopy-viewer/tar.gz/03b4732f05fb7d02b6247e2d75e69c73ab5c88ff': true
+
 
 overrides:
   '@types/d3-dispatch': 3.0.6