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@krishnanlab

Krishnan Lab

Laboratory for Computational Genomics and Biomedical Data Science

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  1. PecanPy PecanPy Public

    A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec

    Python 163 23

  2. txt2onto txt2onto Public

    Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.

    Python 24 6

  3. teaching teaching Public

    Courses & workshops led by members of the Krishnan Lab.

    Jupyter Notebook 23 19

  4. obnb obnb Public

    A Python toolkit for setting up benchmarking dataset using biomedical networks

    Python 22 1

  5. PyGenePlexus PyGenePlexus Public

    A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.

    Python 20 3

  6. RNAseq_coexpression RNAseq_coexpression Public

    In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.

    HTML 14 4

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