"stuff"2NIDM

Repo for the process of adding the results of any processing (for example, fmriprep) to the NIDM graph.

These examples are designed to be specific examples of a generic csv2NIDM problem.

In general, the goal is to:

• Run an analysis tool (such as fmriprep),
• Represent the results of the tool in a CSV file (example here)
• Generate (or fetch) a dictionary for the results as a CSV file (example here)
• Generate a tool description file (as a CSV file) that captures the details of the analysis (example here)
• Use the above 3 CSV files as input to pynidm to generate either a standalone NIDM representation of the results of the analysis tool, or append the tool results to the NIDM representation of the dataset that the tool was applied to.

Examples

fmriprep

We show a worked example for fmriprep here

mriqc

We show a worked example for mriqc here