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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 81 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 48 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 34 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 27 3

  6. BigStitcher-Spark BigStitcher-Spark Public

    Running compute-intense parts of BigStitcher distributed

    Java 26 13

Repositories

Showing 10 of 282 repositories
  • n5-zstandard Public

    Zstandard Compression for N5

    JaneliaSciComp/n5-zstandard’s past year of commit activity
    Java 1 BSD-3-Clause 1 0 0 Updated May 16, 2025
  • fileglancer Public

    Browse, share, and publish data in the Janelia file system

    JaneliaSciComp/fileglancer’s past year of commit activity
    TypeScript 1 BSD-3-Clause 0 0 2 Updated May 16, 2025
  • fileglancer-central Public

    Central metadata server for Fileglancer deployments

    JaneliaSciComp/fileglancer-central’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated May 16, 2025
  • ShroffCelegansModels.jl Public
    JaneliaSciComp/ShroffCelegansModels.jl’s past year of commit activity
    Julia 3 MIT 0 0 41 Updated May 16, 2025
  • easifish Public
    JaneliaSciComp/easifish’s past year of commit activity
    Nextflow 0 BSD-3-Clause 0 0 0 Updated May 15, 2025
  • fileglancer-hub Public

    Jupyterhub launcher configuration for the fileglancer application

    JaneliaSciComp/fileglancer-hub’s past year of commit activity
    HTML 0 BSD-3-Clause 0 0 0 Updated May 14, 2025
  • containers Public

    Containers for workflow plugins

    JaneliaSciComp/containers’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated May 14, 2025
  • videoAnnotation Public
    JaneliaSciComp/videoAnnotation’s past year of commit activity
    JavaScript 1 BSD-3-Clause 0 0 0 Updated May 14, 2025
  • neuronbridge-precompute Public

    Utilities for indexing and transferring of NeuronBridge-related files

    JaneliaSciComp/neuronbridge-precompute’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated May 14, 2025
  • BigStitcher-Spark Public

    Running compute-intense parts of BigStitcher distributed

    JaneliaSciComp/BigStitcher-Spark’s past year of commit activity
    Java 26 BSD-2-Clause 13 15 1 Updated May 14, 2025
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