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Brody-Lab

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  1. chronic_neuropixels chronic_neuropixels Public

    Repository of code, data and CAD files associated with Luo*, Bondy* et al (2020). "An approach for long-term, multi-probe Neuropixels recordings in unrestrained rats"

    MATLAB 8 5

  2. MixtureAgentsModels MixtureAgentsModels Public

    Julia 8

  3. PulseInputDDM.jl PulseInputDDM.jl Public

    A Julia library for fitting DDMs to pulse-based evidence accumulations task data

    Julia 5 3

  4. venditto_glm-hmm venditto_glm-hmm Public

    MATLAB 2 3

  5. Kilosort2 Kilosort2 Public

    Forked from MouseLand/Kilosort

    Fast spike sorting with drift correction for up to a thousand channels

    MATLAB 1

  6. jbreda_animal_training jbreda_animal_training Public

    Repository for the ingestion, cleaning and visualization of behavioral experiments

    Jupyter Notebook 1

Repositories

Showing 10 of 43 repositories
  • decision_dynamics_commitment Public

    Code and data accompanying: Luo*, Kim*, et al. (2025). Transitions in dynamical regime and neural mode underlie perceptual decision-making. PMID: 37904994

    Brody-Lab/decision_dynamics_commitment’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated May 20, 2025
  • jbreda_animal_training Public

    Repository for the ingestion, cleaning and visualization of behavioral experiments

    Brody-Lab/jbreda_animal_training’s past year of commit activity
    Jupyter Notebook 1 0 39 0 Updated May 16, 2025
  • mouse_npx_holders Public

    3D files for chronic neuropixel holders modified by Jesse Kaminsky and Jorge Yanar from holders in Luo, Bondy et al. 2020.

    Brody-Lab/mouse_npx_holders’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated May 5, 2025
  • flexible_decision_making_rnn Public
    Brody-Lab/flexible_decision_making_rnn’s past year of commit activity
    MATLAB 0 Apache-2.0 0 0 0 Updated May 5, 2025
  • flexible_decision_making_rats Public
    Brody-Lab/flexible_decision_making_rats’s past year of commit activity
    MATLAB 0 Apache-2.0 0 1 0 Updated May 5, 2025
  • PulseInputDDM.jl Public

    A Julia library for fitting DDMs to pulse-based evidence accumulations task data

    Brody-Lab/PulseInputDDM.jl’s past year of commit activity
    Julia 5 Apache-2.0 3 3 2 Updated Apr 19, 2025
  • tzl_spGLM Public

    Generalized linear model of the spike train of individual neurons recorded in the Poisson Clicks task

    Brody-Lab/tzl_spGLM’s past year of commit activity
    Julia 0 0 0 0 Updated Dec 30, 2024
  • JRCLUST Public Forked from JaneliaSciComp/JRCLUST

    JRCLUST

    Brody-Lab/JRCLUST’s past year of commit activity
    MATLAB 0 Apache-2.0 22 2 0 Updated Nov 21, 2024
  • FHMDDM Public

    Factorial hidden Markov drift-diffusion model

    Brody-Lab/FHMDDM’s past year of commit activity
    Julia 0 Apache-2.0 0 0 0 Updated Oct 4, 2024
  • findr Public

    FINDR: Flow-field Inference from Neural Data using deep Recurrent networks

    Brody-Lab/findr’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 1 0 0 Updated Oct 1, 2024
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