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Merge branch 'develop' into claude/statpopgen-layout-compression-SAaRE

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statpopgen: store GT genotypes as u8 (schema + builder + regression test) #8230

Merge branch 'develop' into claude/statpopgen-layout-compression-SAaRE
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CodSpeed HQ / CodSpeed Performance Analysis failed Jun 3, 2026

1 benchmark regressed

⚠️ Unknown Walltime execution environment detected

Using the Walltime instrument on standard Hosted Runners will lead to inconsistent data.

For the most accurate results, we recommend using CodSpeed Macro Runners: bare-metal machines fine-tuned for performance measurement consistency.

⚡ 5 improved benchmarks
❌ 1 regressed benchmark
✅ 1269 untouched benchmarks

Warning

Please fix the performance issues or acknowledge them on CodSpeed.

Performance Changes

Mode Benchmark BASE HEAD Efficiency
Simulation chunked_varbinview_canonical_into[(100, 100)] 273.3 µs 308.3 µs -11.34%
Simulation chunked_varbinview_canonical_into[(1000, 10)] 197.7 µs 161.4 µs +22.5%
Simulation encode_varbin[(1000, 4)] 162.3 µs 141.6 µs +14.62%
Simulation encode_varbin[(1000, 2)] 161.3 µs 141 µs +14.39%
Simulation encode_varbin[(1000, 8)] 163 µs 142.8 µs +14.16%
Simulation encode_varbin[(1000, 32)] 168.3 µs 147.8 µs +13.87%

Tip

Investigate this regression by commenting @codspeedbot fix this regression on this PR, or directly use the CodSpeed MCP with your agent.


Comparing claude/statpopgen-layout-compression-SAaRE (aef5ba3) with develop (66335d4)

Open in CodSpeed