Medical Concept Annotation Tool
System for Medical Concept Extraction and Linking
Radiology Objects in COntext (ROCO): A Multimodal Image Dataset
A sophisticated smart symptom search engine
[Neurocomputing 2023] Relational Graph Transformer for Knowledge Graph Representation
Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.
Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
Weakly supervised medical named entity classification
A near real-time named-entity recognizer
An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being a free UMLS license holder. This repo will subset 2021AB UMLS native release, introduce/build upon UMLS provided tools to load a configured subset into first a relational database --> MySQL, SQLite, PostgreSQL…
Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
Medical Relations and Entities Extraction
Rare disease identification from free-text clinical notes with ontologies and weak supervision
Toolkit for a learning health system
Build a medical knowledge graph based on Unified Language Medical System (UMLS)
Build a knowledge graph from UMLS Knowledge Sources (2022) with load, visualize and query with Neo4j and Scispacy
Sparrow AI - API for disease diagnostics
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