A Tool to Annotate and Prioritize Exome Variants
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Aug 3, 2026 - Java
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phenotypes
Here are 85 public repositories matching this topic...
An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/
nlp docker natural-language-processing mongodb solr luigi phenotype phenotypes clinical-research clinical-quality-language nlpql clinical-phenotyping
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Mar 28, 2024 - Jupyter Notebook
Repository for the GA4GH phenopacket schema
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Sep 1, 2026 - Java
API for linked biological knowledge
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Apr 26, 2022 - Python
ProCyon: A multimodal foundation model for protein phenotypes
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Nov 25, 2025 - Python
PATO - the Phenotype And Trait Ontology
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Jul 15, 2026 - Makefile
Learn interpretable computational phenotyping models from k-merized genomic data
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Aug 9, 2022 - Python
A phenotype-based tool for variant prioritization in WES and WGS data
variants disease phenotypes variant-annotations variant-analysis omim vcf-files translationalscience prioritize-disease-variants rare-variants synthetic-genomes
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Nov 21, 2022 - Java
Flexible analysis of high-content CRISPR screening
crispr-analysis crispr phenotypes crispr-cas9 functional-genomics ngs-analysis perturbation-screen sequencing-data crispr-cas12
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Mar 6, 2026 - Python
R package for epigraphdb
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Jul 6, 2024 - R
source files for OBA (Ontology of Biological Attributes)
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Sep 2, 2026 - Jupyter Notebook
phenol: Phenotype ontology library
java genomics ontologies phenotypes monarchinitiative phenomics human-phenotype-ontology mammalian-phenotype-ontology
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Jun 30, 2026 - Java
knowledge-graph named-entity-recognition microbial-genomics microbial-trait-prediction microbiology metabolism traits phenotypes data-modeling microbial-genomes environments chemicals microbial-ecology chebi envo anatomical-knowledge ncbitaxonomy cell-shapes microbial-traits microbial-growth
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Sep 7, 2026 - Jupyter Notebook
Software program for generating synthetic datasets for genotypes and phenotypes
bioinformatics genomics genetics simulation julia generative-model polygenic-risk-scores phenotyping data-generator phenotypes synthetic-data polygenic-scores
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Jun 1, 2023 - Jupyter Notebook
ComptoxAI - An artificial Intelligence toolkit for computational toxicology
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Aug 15, 2026 - Python
Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized.
mysql website vuejs database genetics climate-data phenotypes pedigree genotypes plant-genetic-resources germinate chemical-compounds
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Sep 1, 2026 - Vue
Internationalisation of the HPO content
language translation semantic-web ontology phenotyping phenotypes hpo hpo-translations phenomics phenotype-ontologies obofoundry
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Feb 27, 2023
Crossmapped phenotype ontologies for the oncology domain
ontology phenotypes cancer-research oncology phenotype-exchange-format phenotype-ontologies phenotype-corpus
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Sep 3, 2026 - R
Fission Yeast Phenotype Ontology
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Sep 2, 2026 - Makefile
This is a set of useful tools for using, creating, validating and generally working with Codelists in Health Research. The tools are in Rust with Python and R bindings so they can be used in any of the 3 languages.
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Apr 24, 2026 - Rust
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