GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets
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Sep 7, 2026 - Python
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micro-manager
Here are 20 public repositories matching this topic...
Pure python/C++ micro-manager ecosystem
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Sep 7, 2026 - Python
Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.
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Jul 8, 2024 - C++
A set of Qt-based widgets onto the pymmcore-plus model
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Jul 19, 2026 - Python
A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Supports XInput game controllers to move stage, take images, run ImageJ macros on images or Bio C# scripts.
plugin imagej scripting microscopy imaging histology microscope micro-manager whole-slide-imaging microscope-stage-controller image-stacks image-acquisition imagej-macro microscope-control
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Jun 19, 2026 - C#
Online processing plugin (Micro-Manager & ImageJ) for quality-controlled super-resolution localization imaging.
imagej micro-manager localization-microscopy localization-density localization-precision mle-localization
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Sep 16, 2020 - C++
Matlab microscope control software integrated with custom TTL controller for acquisition of 4D datasets with up to sub-millisecond temporal resolution
micro-manager microscope-stage-controller microscope-control nikon-ti2 device-adapter micro-manipulation
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Aug 1, 2024 - MATLAB
C++ and Qt based microscope control software
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Sep 8, 2026 - C++
A collection of scripts related to Micro-Manager.
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Mar 2, 2019 - Shell
micro-manager 2.0 plugin that enables python control using Py4j remote procedure calls and IPC data transfer using memory mapped files
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Feb 7, 2020 - Java
MIDI Device control for microscopes using pymmcore
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Sep 7, 2026 - Python
Configure and example: Use Matlab call Micro-Manager to control microscope
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May 9, 2026 - Jupyter Notebook
MicroManager 2.0 plugin for injecting external images into the processing pipeline, bypassing the need to acquire images in real time by a camera.
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Jul 6, 2017 - Java
An agent that turns a research goal into microscope settings checked against what the instrument can physically do. Eight review lenses, 32 hard gates, and BLOCKED when the evidence for a setting does not exist.
reproducible-research scientific-computing lab-automation microscopy biophysics experiment-design micro-manager confocal-microscopy softmatter optical-tweezers ai-agent pymmcore-plus claude-code
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Sep 8, 2026 - Python
An example how to write plugin for Micro-Manager (μ-Manager) 2.0 using Gradle Kotlin build system. This repository can be used directly with and IntelliJ.
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Sep 23, 2024 - Java
Software to interface a physical control panel with micro-manager via pycromanager
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Aug 18, 2023 - Python
This is the Git repository for creating a Micro-manager plugin to run a custom python script for localizing and visualizing SMLM images
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May 26, 2025 - Python
Live stream of a camera via pycromanager, show live background subtraction, save files
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Aug 14, 2026 - Python
Matlab GUI for live stream from camera though MicroManager core
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Sep 17, 2024
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