Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge
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Updated
Oct 17, 2024 - Python
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evolutionary-scale-modeling
Here are 4 public repositories matching this topic...
Protein Clustering
sequence-clustering linclust unsupervised-learning kmeans-clustering protein-clustering mmseqs2 evolutionary-scale-modeling
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Updated
Sep 9, 2022 - Jupyter Notebook
DeepMind AlphaFold 2 open-source study fork — annotated notes on Evoformer architecture, MSA row/column attention, structure module, pLDDT confidence scoring, and template embedding pipeline.
bioinformatics deep-learning structural-biology computational-biology deepmind protein-structure-prediction alphafold evolutionary-scale-modeling ai-for-science equivariant-neural-network
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Jul 16, 2025 - Python
AlphaFold2 structure prediction pipeline via ColabFold — pLDDT confidence colouring, PAE matrix heatmaps, DSSP secondary structure assignment, and Cα RMSD comparison.
bioinformatics deep-learning structural-biology computational-biology molecular-biology protein-structure-prediction alphafold evolutionary-scale-modeling ai-for-science equivariant-transformer
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Updated
Mar 15, 2026 - Python
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