A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
Easily install and load packages from the tidyomics ecosystem
A Python library for reading and writing Flow Cytometry Standard (FCS) files
Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.
A data-centric flow/mass cytometry automated analysis framework
Huge-scale, high-performance flow cytometry clustering in Julia
Image Mass Cytometry analysis pipeline
Fast embedding ot multidimensional datasets, great for cytometry data
FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
An R package for analyzing high-dimensional cytometry data using the tidyverse.
an interactive explorer for flow cytometry data
A clustering algorithm that will perform clustering on each of a time-series of discrete datasets, and explicitly track the evolution of clusters over time.
Official implementation of GateNet
SuperCell for Cytometry data
Single-cell dimensionality reduction toolkit
Single-cell dimensionality reduction evaluation and benchmarking toolkit
Import script needed to build FluPRINT database from source 💻
Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
Integration of multi-batch cytometry datasets
Algorithms for the selection of fluorescent reporters.
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