Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
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Sep 11, 2026 - Python
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bioimaging
Here are 55 public repositories matching this topic...
C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
python c-plus-plus cross-platform image-processing stitching high-performance-computing tomography image-analysis brain-imaging bioimage-informatics cluster-computing computing-cluster bioimaging bioimage-analysis 3d-images non-rigid-registration non-rigid-stitching
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Jun 25, 2025 - C++
Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
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Sep 12, 2026 - Python
Discover, install, and share napari plugins
python tracking machine-learning deep-learning analysis detection plugins themes registration segmentation imaging denoising bioimaging napari-plugin napari
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Mar 6, 2026 - TypeScript
Python libraries for loading, running and packaging bioimage.io models
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Sep 11, 2026 - Jupyter Notebook
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
life-sciences-image gating mcd ome-tiff imc histology image-analysis-workflows tissue-classification cell-segmentation bioimage-informatics bioimaging single-cell-analysis bioimage-analysis histological-images immunofluorescence bioimage-tools imaging-mass-cytometry tissue-analysis
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Sep 23, 2025 - R
R package for visualization of highly multiplexed imaging data
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Aug 25, 2026 - R
BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
python slurm high-performance-computing fair image-analysis omero bioimaging high-throughput-screening high-content-screening cytomine biomero biaflows
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Sep 10, 2026 - Python
An introduction to OME-Zarr for big bioimaging data
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Sep 1, 2026 - Python
A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-Zarr tools.
visualization https s3 scientific-visualization bioimaging scivis ome-zarr ome-ngff aws-open-dataset
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Feb 14, 2026 - Python
Package providing bioimaging functionality using TileDB. Source of the tiledb-bioimg Python package.
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Dec 17, 2025 - Python
Python 3 x-ray simulator
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Jan 26, 2019 - Jupyter Notebook
DeepCOVIDExplainer: Explainable COVID-19 Diagnosis from Chest X-ray Images
bioinformatics deep-neural-networks deep-learning artificial-intelligence healthcare bioimaging covid-19
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Nov 16, 2020 - Jupyter Notebook
TileDB BioImaging plugin for Napari
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Feb 4, 2025 - Python
Visualisation software for imaging mass cytometry data
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Feb 22, 2023 - Rust
3D volume rendering software for fluorescence microscopy
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May 18, 2024 - Swift
AI research agents + scientific image viewer for bioimaging & neuroimaging — LangGraph agents, GPU inference, and native in-browser OME-Zarr / TIFF / NIfTI / HDF5 viewers.
react golang ui nats medical-imaging scientific-computing image-viewer neuroimaging microscopy chat-ui autonomous-agents bioimaging agent-framework vllm langgraph agentic-ai
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Sep 3, 2026 - Python
Zarr Homepage
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Sep 10, 2026 - Vue
Scripts for use with BIOMERO
slurm high-performance-computing fair image-analysis omero bioimaging high-throughput-screening high-content-screening cytomine biomero biaflows
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Sep 10, 2026 - Python
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