bids-apps

BIDScoin converts your source-level neuroimaging data to BIDS

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

Preprocessing of arterial spin labeling (ASL) data

The Medical Image Analysis Laboratory Super-Resolution ToolKit (MIALSRTK) consists of a set of C++ and Python processing and workflow tools necessary to perform motion-robust super-resolution fetal MRI reconstruction in the BIDS Apps framework.

Reconstruction of preprocessed q-space images (dMRI)

This an example app that can serve as a template.

A Django(backend) & React(frontend) based full-stack real time auction application

A repo of current preprocessing methods for the Cogan Lab

Emits nextflow channels from Brain Imaging Data Structure data.

Rapid and automated conversion of neuroimaging data to BIDS

The FFRPrep BIDS App repository.

MP2RAGE Scripts - T1 map correction & Background noise removal

BIDS app to view a dataset content and the events file content

Python/R scripts for neural/behavioral data analysis from the Photographer Paradigm

A user interface for cloud based medical image storage

MedTech tender & procurement knowledge base (glossary + guides). Primary site: orbid.dev (aux: medstrato.com). Not app source code.