Evolutionary couplings from protein and RNA sequence alignments
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Apr 20, 2026 - Jupyter Notebook
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3d-structure
Here are 21 public repositories matching this topic...
web-based protein structure viewer and analysis tool interactively or in batch mode
nodejs delphi webgl vr ar jupyter-notebook chemical protein snp nucleotide structure-viewer 3d-structure 3d-viewer molecular-viewer icn3d protein-viewer
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Aug 27, 2026 - JavaScript
📖📚An introductory tutorial for BioJava
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Feb 23, 2024 - Python
The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
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Mar 6, 2024 - Perl
RNA/DNA 3D structure alignment tool
bioinformatics algorithm biology structural-biology structure dna alignment rna-structure rna biological-data-analysis superposition 3d structure-alignment 3d-structure bioinformatics-tool dna-structure rna-3d-structure nucleic-acid dna-3d-structure 3d-structure-alignment
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Sep 3, 2026 - Jupyter Notebook
Retrofuturistic demo
art artwork threejs demo demoscene digital-art three-js 3d-graphics synthwave 3d-structure 80s threejs-learning threejs-example 3d-scene retrofuturism mark-fisher k-punk capitalist-realism
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Apr 27, 2026 - JavaScript
A parent project for a set of subprojects related to Mean of Circular Quantities (MCQ).
bioinformatics clustering comparison rna 3d mcq 3d-structure dissimilarity distance-matrix circular-quantities
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Sep 11, 2026 - Java
RNA/DNA 3D structure alignment tool
bioinformatics algorithm biology structural-biology structure motif dna rna-structure rna biological-data-analysis superposition 3d 3d-structure bioinformatics-tool motif-search dna-structure rna-3d-structure nucleic-acid structural-motif dna-3d-structure
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Aug 3, 2026 - Python
Library for processing RNA structures using PDB, DSSR and other data
python bioinformatics parsing biology structural-biology pdb structure python-library jupyter-notebook rna-structure rna biological-data-analysis mmcif 3d 3d-structure bioinformatics-tool dssr pdb-parsing mmcif-parsing dssr-parsing
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Nov 7, 2025 - Python
Resources for RNA Structural Bioinformatics: RNA 3D Motif Atlas, RNA Non-redundant Lists, RNA Structure Atlas
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Jun 29, 2026 - PHP
A dataset of long-range RNA 3D modules and motifs
bioinformatics research modules biology structural-biology rna-structure rna lora motif-discovery staples 3d-structure motif-analysis motifs artem long-range doublets rna-structure-motifs tertiary-interactions rna-3d-structure tertiary-motifs
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Oct 4, 2024
Applying ARTEM to RNA tertiary motif search using kink-turns as an example
bioinformatics research biology structural-biology pdb dataset rna-structure rna 3d-structure motif-analysis motifs artem rna-structure-motifs tertiary-interactions rna-3d-structure tertiary-motifs kink-turn k-turn 3d-motif isostericity
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Jul 9, 2025 - Jupyter Notebook
Voxel based 3d fractal generator
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Mar 16, 2021 - C++
A Web App that allows the user to search for 2D & 3D structure of over 100 million Compounds, get briefed about the constituent elements of the compound in an organized periodic table.
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Jul 10, 2023 - JavaScript
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May 5, 2017 - Python
Java-based protein structure viewer and analysis program
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May 19, 2025
Contact Extractor from PDB/mmCIF coordinate files
atom parser geometry pdb contacts distance extractor structure atoms contact mmcif 3d 3d-structure 3d-coordinate bioinformatics-tool atom-atom macromolecules contact-extractor atom-atom-pairs clapnac
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May 9, 2025 - Python
Identifying potential liabilities in therapeutic antibody candidates using 3D structure analysis. Takes a protein structure in PDB format through preprocessing and liability detection to flag developability risks.
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Aug 31, 2026 - Python
PSIST algorithm to index and query 3D protien structures
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Mar 29, 2020 - C++
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