Backport PR #4112 on branch 1.12.x (fix: use get_igraph_from_adjacency for graph construction)

[flying-sheep]

Backports #4112

[codecov]

Codecov Report

❌ Patch coverage is 78.57143% with 3 lines in your changes missing coverage. Please review.
✅ Project coverage is 78.52%. Comparing base (81d229c) to head (f9e19d5).
⚠️ Report is 1 commits behind head on 1.12.x.
✅ All tests successful. No failed tests found.

Files with missing lines	Patch %	Lines
src/scanpy/neighbors/__init__.py	0.00%	1 Missing ⚠️
src/scanpy/tools/_paga.py	0.00%	1 Missing ⚠️
src/scanpy/tools/_utils.py	83.33%	1 Missing ⚠️

Additional details and impacted files

@@           Coverage Diff           @@
##           1.12.x    #4134   +/-   ##
=======================================
  Coverage   78.52%   78.52%           
=======================================
  Files         121      121           
  Lines       12651    12651           
=======================================
  Hits         9934     9934           
  Misses       2717     2717           

Flag	Coverage Δ
hatch-test.low-vers	77.77% <78.57%> (ø)
hatch-test.pre	78.41% <78.57%> (ø)

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Files with missing lines	Coverage Δ
src/scanpy/_utils/__init__.py	78.63% <100.00%> (ø)
src/scanpy/metrics/_metrics.py	97.14% <100.00%> (-0.05%)	⬇️
src/scanpy/plotting/_tools/paga.py	63.81% <100.00%> (ø)
src/scanpy/tools/_draw_graph.py	63.93% <100.00%> (ø)
src/scanpy/neighbors/__init__.py	80.19% <0.00%> (ø)
src/scanpy/tools/_paga.py	32.52% <0.00%> (ø)
src/scanpy/tools/_utils.py	86.95% <83.33%> (+0.19%)	⬆️