Structural Bioinformatics Laboratory

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1. mcp-proto-okn mcp-proto-okn Public

   A Model Context Protocol (MCP) server that provides tools for querying SPARQL endpoints, with specialized support for NSF-funded Proto-OKN (Prototype Open Knowledge Network) knowledge graphs hosted…

   Python 8 7

2. mcp-okn mcp-okn Public

   Next Generation MCP service to query the NSF Open Knowledge Network Knowledge Graphs

   Python 3 2

3. mcp-genelab mcp-genelab Public

   A Model Context Protocol (MCP) server for querying Neo4j Graph Databases with customized tools to query the NASA GeneLab Knowledge Graph

   Python 3 1

4. kg-import kg-import Public

   kg-import automates the ingestion of heterogeneous datasets into a Knowledge Graph.

   Jupyter Notebook 6 4

5. sparql-to-mermaid sparql-to-mermaid Public

   Render a SPARQL query as a Mermaid diagram (Python port of sparql-examples-utils' mermaid converter)

   Python

6. mcp-proto-okn-benchmark mcp-proto-okn-benchmark Public

   A benchmark harness for MCP servers over the Proto-OKN knowledge graphs, and a three-model study of what a server's tooling is actually worth

   Python 1