Pathogen Informatics, Wellcome Sanger Institute
- 159 followers
- Hinxton, Cambs., UK
- http://www.sanger.ac.uk/science/groups/pathogen-informatics
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- assorted-sub-workflows Public
sanger-pathogens/assorted-sub-workflows’s past year of commit activity - dlh-in-a-box-umbrella-helm-chart Public
An Open Source Data Lakehouse Umbrella Helm Chart, dependent on trino, prefect, minio, hive and datahub
sanger-pathogens/dlh-in-a-box-umbrella-helm-chart’s past year of commit activity - strain_mapper Public
sanger-pathogens/strain_mapper’s past year of commit activity - mapping-helminth Public
A pipeline for mapping helminth genomes minimap2 as a mapper and GATK/Samtools/Sambamba for further processing.
sanger-pathogens/mapping-helminth’s past year of commit activity - gemsweep Public
Nextflow pipeline for deconvoluting mixed sample reads into bins with strain-level resolution.
sanger-pathogens/gemsweep’s past year of commit activity - rvi-vl-kraken-prep Public
sanger-pathogens/rvi-vl-kraken-prep’s past year of commit activity
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