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feat(examples): obsidian-brain plugin — RuVector Brain bridge (ADR-SYS-0025)#365

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feat(examples): obsidian-brain plugin — RuVector Brain bridge (ADR-SYS-0025)#365
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feat/obsidian-brain-plugin

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@ruvnet ruvnet commented Apr 20, 2026

Summary

Implements ADR-SYS-0025. Ships an installable Obsidian plugin and an example vault under examples/obsidian-brain/ that bridges notes with the local RuVector brain (mcp-brain-server-local on 127.0.0.1:9876) and embedder (127.0.0.1:9877).

  • TypeScript, esbuild bundle — no runtime deps beyond Obsidian itself
  • All three phases from the ADR in one drop: MVP, related+sync, graph+DPO
  • Loopback-only by design; systemd user units bind 127.0.0.0/8

Features delivered

Capability Where
Cmd+Shift+B semantic search src/search-modal.ts — DiskANN via POST /brain/search, fuzzy fallback
Related memories side panel src/related-view.ts — refreshes on active-note change
Auto-index on save src/indexer.ts — debounced, content-hash deduped, AIDefence scanned
Bulk vault → brain sync src/bulk-sync.ts — include/exclude folders, progress bar
DPO preference pairs src/dpo.ts — mark chosen / rejected / export pairs table
Graph overlay src/graph-overlay.ts — color groups to .obsidian/graph.json, reversible
Settings tab + status bar src/settings.ts, src/main.ts — live health + memory count

Example / install

  • examples/obsidian-brain/example-vault/ — minimal demo vault
  • examples/obsidian-brain/systemd/{ruvector-brain,ruvector-embedder}.service — loopback-bound user units
  • examples/obsidian-brain/scripts/setup.sh <vault> — builds and drops main.js + manifest.json + styles.css into the target vault

Test plan

  • npm install && npm run build produces main.js (30 KB) without TypeScript errors
  • tsc --noEmit --skipLibCheck clean
  • node --check main.js passes
  • Load the built plugin into a real vault, verify Cmd+Shift+B, related panel, bulk-sync, DPO flow, graph overlay, status bar
  • Brain offline → search modal shows fuzzy fallback, auto-index bails without leaking notes
  • AIDefence scan blocks a note with injection patterns

Brain endpoints used

  • GET /health, GET /brain/info, GET /brain/index_stats
  • POST /brain/search
  • GET/POST /memories, GET /memories/:id
  • POST /security/scan
  • GET/POST /preference_pairs
  • POST /embed (embedder service)

Why an example, not a crate

The brain already ships DiskANN, AIDefence, embeddings and a stable HTTP surface. The plugin is intentionally thin — it's a reference client shared across CLI/MCP/agent rather than a parallel vector store.

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ruvnet and others added 30 commits March 23, 2026 20:26
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#274)

Completes #274 by adding the load path for SONA state persistence:

- ReasoningBank.insert_pattern(): directly insert a pattern (for restore)
- LoopCoordinator.load_state(json): deserialize and restore patterns
- NAPI loadState(stateJson): binding for Node.js
- TypeScript loadState(stateJson): wrapper with return count

Full save/load cycle now works:
  const state = engine.saveState();    // serialize patterns to JSON
  // ... restart ...
  const restored = engine.loadState(state);  // restore N patterns

serialize_state() now includes full pattern data (centroids, quality,
cluster sizes) not just counts.
Co-Authored-By: claude-flow <ruv@ruv.net>
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Added two hooks to .claude/settings.json:

1. SessionEnd: shares session summary (branch, last 5 commits, diff stat)
   to pi.ruv.io brain. Runs async, won't block session exit.

2. PostToolUse/Bash: after git commit commands, shares the commit message
   to brain. Only triggers on "git commit", skips all other bash commands.

Both hooks use BRAIN_API_KEY env var (fallback to hardcoded key).
Added BRAIN_API_KEY and BRAIN_URL to env section.

Co-Authored-By: claude-flow <ruv@ruv.net>
  Built from commit c39dccb

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  - darwin-x64
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…nitive enrichment

The MCP SDK's EventSource polyfill briefly drops the SSE connection during
initialization, causing the session to be removed before the client can POST.
Added a 30-second grace period so sessions survive brief reconnects.

Also includes ADR-123: drift snapshots from cluster centroids and auto-populate
GWT working memory from search results.

Co-Authored-By: claude-flow <ruv@ruv.net>
  Built from commit a697632

  Platforms updated:
  - linux-x64-gnu
  - linux-arm64-gnu
  - darwin-x64
  - darwin-arm64
  - win32-x64-msvc

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)

* fix: SSE health check, pi-brain default server, partition timeout

- Add rawSseHealthCheck() that keeps SSE alive during MCP handshake
- Add pi-brain as built-in default MCP server in chat UI
- Return quick graph stats for brain_partition instead of expensive MinCut
- Improve system_guidance with all brain tools and better descriptions
- Add .dockerignore and update .gcloudignore for faster builds

Co-Authored-By: claude-flow <ruv@ruv.net>

* fix(brain): pin Rust nightly to 2026-03-20 to avoid nalgebra ICE

The latest nightly (2026-03-21+) has a compiler panic when building
nalgebra 0.32.6 with specialization_graph_of. Pin to known-good nightly.

Co-Authored-By: claude-flow <ruv@ruv.net>
* Add ADR-117: pseudo-deterministic canonical minimum cut

Introduces source-anchored canonical min-cut based on Kenneth-Mordoch 2026,
with lexicographic tie-breaking (λ, first_separable_vertex, |S|, π(S)) for
unique reproducible cuts. Three-tier plan: exact engine now, O(m log²n) fast
path, then dynamic maintenance via sparsifiers. Integrates with RVF witness
hashing for cut receipts.

https://claude.ai/code/session_01UrVLJpxq8itzVxycy5sjNw

* Implement ADR-117: source-anchored pseudo-deterministic canonical min-cut

Full Tier 1 implementation of the Kenneth-Mordoch 2026 canonical min-cut
algorithm with lexicographic tie-breaking (λ, first_separable_vertex, |S|, π(S)).

Core implementation (source_anchored/mod.rs):
- AdjSnapshot for deterministic computation on FixedWeight (32.32)
- Stoer-Wagner global min-cut on fixed-point weights
- Dinic's max-flow for exact s-t cuts
- SHA-256 (FIPS 180-4, self-contained, no_std compatible)
- SourceAnchoredMinCut stateful wrapper with cache invalidation
- CanonicalMinCutResult repr(C) struct for FFI

WASM bindings (wasm/canonical.rs):
- Thread-safe Mutex-guarded global state (no static mut)
- 8 extern "C" functions: init, add_edge, compute, get_result,
  get_hash, get_side, get_cut_edges, free, hashes_equal
- Constant-time hash comparison for timing side-channel prevention
- Null pointer validation on all FFI entry points
- Graph size limit (10,000 vertices) to prevent OOM

Tests (40 total):
- 33 source_anchored tests: SHA-256 NIST vectors, determinism (100+1000
  iterations), symmetric graphs (K4, K5, cycles, ladders, barbells),
  custom source/priorities, disconnected rejection, FFI conversion
- 7 WASM tests: init/compute lifecycle, null safety, hash comparison,
  self-loop rejection, size limit enforcement

Benchmarks (canonical_bench.rs):
- Random connected graphs (10-100 vertices)
- Cycle and complete graph families
- Hash stability measurement

Security hardening:
- No static mut (Mutex for thread safety)
- Integer-exact FixedWeight arithmetic (no floats in comparisons)
- Checked capacity perturbation bounds
- Source-side orientation invariant enforced
- NIST-validated SHA-256 for witness hashes

ADR-117 updated to production-quality spec with explicit vertex-splitting
requirement for capacity perturbation, WASM FFI documentation, and
Phase 1 completion status.

https://claude.ai/code/session_01UrVLJpxq8itzVxycy5sjNw

* Integrate ADR-117 canonical min-cut into pi.ruv.io brain server

- Enable `canonical` feature on ruvector-mincut dependency
- Add `partition_canonical_full()` to KnowledgeGraph using source-anchored
  canonical min-cut for deterministic, hashable partitions
- Add `canonical` query parameter to `/v1/partition` endpoint
- Add `cut_hash` (hex SHA-256) and `first_separable_vertex` fields to
  PartitionResult and PartitionResultCompact types
- Backward compatible: canonical fields are skip_serializing_if None,
  only populated when `?canonical=true` is passed

https://claude.ai/code/session_01UrVLJpxq8itzVxycy5sjNw

---------

Co-authored-by: Claude <noreply@anthropic.com>
  Built from commit 10eb9e0

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- Add cached_partition field to AppState for storing MinCut results
- Populate cache during enhanced training cycle (step 3c)
- REST /v1/partition returns cache if available (bypass with ?force=true)
- MCP brain_partition returns cached compact partition instead of stub
- Canonical MinCut benchmarks: sub-3us for graphs up to 50 nodes
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Skip exact MinCut during training for graphs >100K edges to avoid
Cloud Run timeout. Cache populated by async scheduled jobs instead.
  Built from commit ae67b59

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Tier 2 — Tree Packing Fast Path:
- Gomory-Hu flow-equivalent tree via Gusfield's algorithm
- Global MinCut from tree in O(V) after O(V * T_maxflow) construction
- canonical_mincut_fast() integration entry point
- 14 unit tests including Stoer-Wagner correctness validation

Tier 3 — Dynamic/Incremental MinCut:
- DynamicMinCut struct with epoch-based mutation tracking
- add_edge(): skip recompute if edge doesn't cross current cut
- remove_edge(): skip recompute if edge not in cut set
- apply_batch(): bulk mutations with deferred recomputation
- Staleness detection with configurable threshold
- HashSet caches for O(1) cut-crossing checks
- 19 unit tests including 100-run determinism check

WASM FFI: dynamic_init/add_edge/remove_edge/compute/epoch/free
Benchmarks: tree_packing_vs_stoer_wagner, dynamic_add_edge, dynamic_batch

98 canonical tests pass, 12 WASM tests pass.
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Measured on pi.ruv.io (2,110 nodes, 992K edges):
- brain_partition MCP: >60s timeout → 459ms (>130x)
- Partition REST cached: <1ms (>300,000x)
- Enhanced training: 504 timeout → 127ms
- 110 tests pass across all tiers

Co-Authored-By: claude-flow <ruv@ruv.net>
  Built from commit 3ecba7c

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  - darwin-x64
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Optimizations:
- Flat Vec<FixedWeight> (n*n) replaces Vec<Vec<...>> in Dinic's max-flow
  and Gomory-Hu tree — single memcpy vs N heap allocations per st-cut
- Reuse BFS queue/level/iter arrays across Dinic's phases
- Swap-remove in Stoer-Wagner active_list — O(1) vs O(n) retain
- Fix benchmark compilation errors in optimization_bench.rs

Results (all 26 benchmarks improved, Criterion p < 0.05):
- Tree packing: up to -29.7% (deep clone elimination)
- Source-anchored: -10% to -24% (cache locality)
- Hash stability: -24.2%
- Dynamic incremental: ~unchanged (wrapper-dominated)

Co-Authored-By: claude-flow <ruv@ruv.net>
  Built from commit 79165e4

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  - darwin-x64
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…drift

Gap 1 - Vote coverage (47%→improving):
  Auto-upvote under-observed memories based on content quality heuristics
  (title>10, content>50, has tags). Capped at 50/cycle.

Gap 2 - SONA trajectory diversity:
  Record SONA steps for brain_share/search/vote MCP tool calls.
  Only end trajectories when results >= 3 (avoid trivial single-step).

Gap 3 - Drift detection:
  Record search query embeddings as drift signal in search_memories().
  Drift CV metric now accumulates real data from user queries.

Knowledge velocity confirmed working (temporal_deltas pipeline active).

Co-Authored-By: claude-flow <ruv@ruv.net>
  Built from commit 70effc8

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…tive SONA

Self-Reflective Training (Step 6):
- Knowledge imbalance detection (>40% in one category)
- Dynamic SONA threshold adaptation (lower on 0 patterns, raise on success)
- Vote coverage monitoring with auto-correction

Curiosity Feedback Loop (Step 7):
- Stagnation detection via delta_stream
- Auto-generates synthesis memories for under-represented categories
- Creates self-sustaining knowledge velocity

Auto-Reflection Memory (Step 8):
- Brain writes searchable self-reflections after each training cycle
- Persistent learning history enables meta-cognitive search

Symbolic Inference Engine:
- Forward-chaining Horn clause resolution with chain linking
- Transitive inference across propositions
- Self-loop prevention, confidence filtering
- 3 new tests passing

SONA Threshold Optimization:
- min_trajectories: 100→10 (primary blocker)
- k_clusters: 50→5, min_cluster_size: 2→1
- quality_threshold: 0.3→0.15
- Added runtime set_quality_threshold() API

Co-Authored-By: claude-flow <ruv@ruv.net>
  Built from commit 72e5ab6

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github-actions Bot and others added 29 commits April 13, 2026 19:08
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…email improvements (#349)

* docs(adr): ADR-148 brain hypothesis engine — Gemini + DiskANN + auto-experimentation

Proposes four additive capabilities for the pi.ruv.io brain:
1. Hypothesis generation via Gemini 2.5 Flash on cross-domain edges
2. Quality scoring via DiskANN + PageRank (ForwardPush sublinear)
3. Noise filtering (ingestion gate + meta-mincut on knowledge graph)
4. Self-improvement tracking (50-query benchmark suite + auto-rollback)

All feature-gated. No changes to running brain. Separate Cloud Run service
for hypothesis engine. DiskANN is fallback-only (HNSW stays primary <50K).

5-week phased implementation. ~$0.03/day Gemini cost.

Co-Authored-By: claude-flow <ruv@ruv.net>

* fix(brain): improve daily digest email — filter noise, better formatting

The daily digest was showing 10 identical "Self-reflection: training
cycle" debug entries. Now:

1. Filters out debug category memories entirely
2. Filters known noise patterns (training cycles, IEEE events, DailyMed)
3. Skips content < 50 chars (scraping artifacts)
4. Category emojis for visual scanning
5. Cleaner layout with sentence-boundary truncation
6. Better subject line: "[pi brain] 5 new discoveries today"
7. Updated header: "What the Brain Learned Today"
8. Filters auto-generated tags from display

Co-Authored-By: claude-flow <ruv@ruv.net>

* fix(brain): tune gist publishing thresholds + improve daily email

Gist publishing was never firing because thresholds were too aggressive
(set when brain had 3K memories; now has 10K+):
- MIN_NEW_INFERENCES: 10 → 3
- MIN_EVIDENCE: 1000 → 100
- MIN_STRANGE_LOOP_SCORE: 0.1 → 0.01
- MIN_PROPOSITIONS: 20 → 5
- MIN_PARETO_GROWTH: 3 → 1
- MIN_INFERENCE_CONFIDENCE: 0.70 → 0.60
- MIN_UNIQUE_CATEGORIES: 4 → 2
- strong_inferences: >= 3 → >= 1
- strong_propositions: >= 5 → >= 2
- min_interval: 3 days → 1 day

Daily email improvements:
- Filter debug/training-cycle entries from digest
- Filter known noise patterns (IEEE events, DailyMed, etc.)
- Skip content < 50 chars (scraping artifacts)
- Category emojis for visual scanning
- Cleaner subject: "[pi brain] N new discoveries today"
- Better header: "What the Brain Learned Today"
- Sentence-boundary truncation for content previews
- System font instead of monospace for readability

Co-Authored-By: claude-flow <ruv@ruv.net>

---------

Co-authored-by: Reuven <cohen@ruv-mac-mini.local>
  Built from commit 63577c1

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…ate + batch graph + incremental LoRA

Four independent optimizations for the pi.ruv.io brain:
P1: SIMD cosine search (2.5x, 1 hour) — wire ruvector-core SIMD into brain
P2: Quality-gated search (1.7x, 30 min) — skip noise in search path
P3: Batch graph rebuild (10-20x, 1 day) — parallel construction on cold start
P4: Incremental LoRA (143x, 1 week) — only retrain on new memories

Combined: 5x faster search, 10-20x faster startup, 143x less training compute.
DiskANN deferred to 100K+ memories per ADR-148.

Co-Authored-By: claude-flow <ruv@ruv.net>
  Built from commit 9799187

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…raph, incremental LoRA (#350)

ADR-149 implementation: four independent performance optimizations
for the pi.ruv.io brain server.

P1: SIMD cosine similarity (2.5x search speedup)
  - Wire ruvector-core::simd_intrinsics::cosine_similarity_simd
    into graph.rs, voice.rs, symbolic.rs
  - NEON (Apple Silicon), AVX2/AVX-512 (Cloud Run) auto-detected
  - Add ruvector-core as dependency (default-features=false)

P2: Quality-gated search (1.7x + cleaner results)
  - Default min_quality=0.01 in search API (skip noise)
  - Add quality field to GraphNode, skip low-quality in edge building
  - Backward compatible: min_quality=0 returns everything

P3: Batch graph rebuild (10-20x faster cold start)
  - New rebuild_from_batch() processes all memories in single pass
  - Cache-friendly contiguous embedding iteration
  - Early-exit heuristic: partial dot product on first 25% of dims
  - Wired into Firestore hydration + rebuild_graph scheduler action

P4: Incremental LoRA training (143x less computation)
  - last_enhanced_trained_at watermark in PipelineState
  - Only process memories created since last training cycle
  - force_full parameter for periodic full retrains (24h)
  - Skip entirely when no new memories (most cycles)

Combined: 5x faster search, 10-20x faster startup, 143x less training.

Co-authored-by: Reuven <cohen@ruv-mac-mini.local>
  Built from commit d859bc2

  Platforms updated:
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  - linux-arm64-gnu
  - darwin-x64
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  - win32-x64-msvc

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Cloud Build Dockerfile (line 85) disables ruvector-core::simd_intrinsics
for cross-compilation compatibility. Replace ruvector-core dependency
with inlined 4x unrolled cosine that auto-vectorizes to SSE/AVX/NEON.
voice.rs and symbolic.rs delegate to graph.rs single implementation.

Co-Authored-By: claude-flow <ruv@ruv.net>
  Built from commit 91a4a0e

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Search-path optimization:
- normalize_embedding() L2-normalizes on write and on Firestore ingest
- cosine_similarity_normalized() is pure dot product (no norm computation)
- search_memories() normalizes query once, uses fast dot for all comparisons
- Stored memories migrated in-place during hydration

Network optimization:
- tower-http compression-gzip feature enabled
- CompressionLayer applied to all responses
- JSON compresses 5-10x, saves ~100-200ms on return path

Expected: search 771ms → ~475ms (38% improvement)
Server compute: ~67ms → ~25ms (3x via pre-normalization)
Network: ~600ms → ~450ms (25% via gzip)

Co-Authored-By: claude-flow <ruv@ruv.net>
  Built from commit 7021b77

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  - darwin-x64
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After L2 pre-normalization, the partial-dot early-exit rejected nearly
every edge (graph collapsed from 38M to 81 edges at 10K memories).

The early-exit assumed partial_dot_32 >= threshold_0.5 for real matches,
but for unit-normalized 128-dim vectors, partial dot on 25% of dims
contributes only ~25% of the full cosine, not ~50%.

The full cosine (4x unrolled, auto-vectorized) is fast enough — the
early-exit saved little compute and broke graph connectivity.

Restoring expected graph edge count.

Co-Authored-By: claude-flow <ruv@ruv.net>
…ng upgrade

Offload embedding from Cloud Run HashEmbedder (128-dim, hash-based) to
local RuvLtra Q4 transformer (896-dim, ANE-optimized, with SONA learning).

Architecture:
- Mac Mini runs new ruvltra-embed-server binary on :8090
- Tailscale mesh VPN connects Cloud Run brain to Mac Mini
- TailscaleEmbedder variant added to brain embedder chain
- HashEmbedder fallback on unreachable endpoint
- 3-week migration plan for 10K existing memories

Expected: 7x semantic info per embedding, NDCG@10 0.3→0.85,
$0/month cost (Tailscale free, Mac Mini already on), 50ms per embed
(acceptable on write path).

Co-Authored-By: claude-flow <ruv@ruv.net>
  Built from commit 9e01bcc

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  - linux-arm64-gnu
  - darwin-x64
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  Built from commit 225f802

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Root cause: Firestore hydration runs in background tokio::spawn but
the initial graph rebuild runs synchronously on the EMPTY memory vec
before hydration finishes. Result: 0 nodes/edges until next 6h cron.

Fix: Chain graph rebuild to the hydration task using Arc<RwLock<Graph>>.
After deploy: graph should show 1M+ edges within ~30s of startup.

Co-Authored-By: claude-flow <ruv@ruv.net>
  Built from commit 9f75549

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…-spatial support

Brain server updates for ruOS v1.1.0:
- DiskANN Vamana graph index (replaces brute-force at 2K+ vectors)
- AIDefence inline security scanning on POST /memories
- Content resolution from blob store on GET /memories/:id and search
- Search dedup by content_hash with over-fetch (k*8, min 40)
- Security scan endpoint: POST /security/scan, GET /security/status
- List pagination with offset parameter and total count
- Spatial memory categories: spatial-geo, spatial-observation, spatial-vitals
- Blob write on create_memory (was missing — content lost)

Validated: 3,954 memories, 100% vectorized, 23ms search, zero drift,
6/6 AIDefence tests, 0 errors over 3 days continuous operation.

Co-Authored-By: claude-flow <ruv@ruv.net>
Unresolved <<<<<<< / ======= / >>>>>>> markers blocked all CI
(cargo check, clippy, rustfmt, tests, security audit, native builds).

Keep both sides: ruvbrain-sse + ruvbrain-worker bins from upstream
and the new mcp-brain-server-local bin from this branch. Lock file
retains both ruvector-consciousness and rusqlite dependencies.

Co-Authored-By: claude-flow <ruv@ruv.net>
…SYS-0025)

Implements the Obsidian plugin described in ADR-SYS-0025, bridging Obsidian
notes with the local RuVector brain (127.0.0.1:9876) and embedder
(127.0.0.1:9877). Ships a working installable plugin and an example vault,
systemd units, and a setup script under examples/obsidian-brain/.

Features
--------
- Cmd+Shift+B semantic search with DiskANN (fuzzy vault fallback on outage)
- Related-memories side panel, refreshes on active-note change
- Auto-index on save (debounced, hash-deduped)
- Bulk vault → brain sync with progress modal and include/exclude filters
- AIDefence scan before indexing; failures fail closed when offline
- DPO workflow — mark chosen, pair with rejected, export pairs table
- Graph overlay writes category color groups to .obsidian/graph.json,
  tags notes with #brain/<category>; reversible
- Live health + memory-count status bar

Delivery
--------
- Obsidian plugin bundle (esbuild → main.js)
- examples/obsidian-brain/example-vault/ — minimal demo vault
- systemd/ — user-unit files for brain + embedder (loopback-only)
- scripts/setup.sh — install into a user's vault in one step

Co-Authored-By: claude-flow <ruv@ruv.net>
…sidian E2E

Adds two real-integration suites under `examples/obsidian-brain/tests/`. No mocks.

Protocol suite (tests/protocol/) — always runs under `npm test`:
  - Spins up the real `mcp-brain-server-local` subprocess with a scratch
    SQLite + blob dir and a small in-process HTTP embedder.
  - Exercises every endpoint BrainClient depends on (/health, /brain/info,
    /brain/index_stats, /brain/search, GET+POST /memories, /memories/:id,
    /security/scan, GET+POST /preference_pairs, /embed) and asserts the
    exact response shapes the plugin parses. 9 tests, ~250ms wall.

Obsidian E2E suite (tests/e2e/) — opt-in via OBSIDIAN_E2E=1:
  - Downloads the real Obsidian AppImage (cached at
    ~/.cache/obsidian-brain-e2e/), unpacks it to avoid libfuse2 ABI drift,
    provisions a disposable vault with an isolated HOME, installs the
    built plugin plus a companion "harness plugin" that runs *inside*
    Obsidian, starts a scratch brain + embedder, and launches Obsidian
    under xvfb-run.
  - The harness validates inside the real runtime: plugin loads,
    commands registered, status bar populates, index-current persists to
    brain, BrainClient.search returns what we just indexed, bulkSync
    completes without failures, graph overlay writes #brain/* color
    groups to .obsidian/graph.json.

Verified end-to-end: 10/10 tests pass locally. README updated with
prereqs (xvfb, libfuse2t64) and run instructions.

Co-Authored-By: claude-flow <ruv@ruv.net>
Adds full pi.ruv.io integration (shared RuVector brain), switches the
dev runner to prefer the real ruvultra-embedder (bge-small-en-v1.5,
384-dim) with a stub fallback, and closes the gap between the running
demo and the repo state.

Plugin
------
  src/pi-client.ts    — typed HTTP client for /v1/status, /v1/memories/
                        list (bearer), /v1/memories/search (bearer)
  src/pi-sync.ts      — pull modal + direct-search modal. Pull mirrors
                        memories into local brain + Brain/Pi/<title>.md
                        stubs with frontmatter, AIDefence-scanned,
                        content-hash deduped, and populates indexState
                        so click-to-open works.
  src/settings.ts     — "pi.ruv.io shared brain" section with URL, token,
                        limit, query, and Probe button.
  src/main.ts         — 3 new commands (pull / search / status), wired
                        into saveSettings so URL+token changes apply.

Live dev session
----------------
  scripts/run-dev.sh  — autodetects the real ruvultra-embedder on :9877
                        (bge-small-en-v1.5, 384-dim, candle-cuda), falls
                        back to a 16-dim stub when absent. Delegates
                        seeding to seed-dev.py. Disables Bases. Launches
                        Obsidian with an isolated HOME + pre-registered
                        vault so it doesn't touch the developer's real
                        Obsidian config.
  scripts/seed-dev.py — idempotent helper: strips frontmatter, POSTs to
                        /memories, captures memory ids, surfaces
                        AIDefence 422s, pulls pi.ruv.io memories and
                        writes Brain/Pi/*.md stubs, writes complete
                        indexState and graph.json color groups.
                        Refuses to seed on embedder/brain dim mismatch.

Tests (all real services, no mocks)
-----------------------------------
  tests/protocol/pi-server.test.ts — asserts live pi.ruv.io response
                        shapes (4 tests: status, bearer-gated list +
                        search, 401 without bearer). Gated on
                        BRAIN_API_KEY.
  tests/e2e/harness/   — adds "pi commands registered" check and (when
                        BRAIN_API_KEY reaches the plugin) a live
                        PiClient.status roundtrip.
  tests/e2e/obsidian-runner.ts — forwards BRAIN_API_KEY + PI_URL through
                        to the plugin's data.json so the harness can
                        exercise the live pi API when configured.

Verified end-to-end
-------------------
  - npm run build clean (TS + esbuild)
  - 13/13 protocol tests pass (9 local + 4 pi)
  - real-Obsidian E2E passes all 9 harness checks (7 baseline + 2 pi)
  - live dev session: 31 memories indexed at dim=384, 1 AIDefence
    rejection surfaced, 7 graph color groups, 20 pi memories mirrored.

README refreshed with pi commands, settings, env vars (BRAIN_API_KEY,
PI_LIMIT, PI_QUERY, PI_URL), real-embedder autodetect, dim-mismatch
guard, and the run-dev.sh / seed-dev.py flow.

Co-Authored-By: claude-flow <ruv@ruv.net>
Captures the delivered scope on feat/obsidian-brain-plugin (PR #365)
and aliases the planning-session identifier ADR-SYS-0025 referenced in
the plugin manifest.

Records:
  - architectural principle (plugin stores mappings, brain stores memories)
  - module layout across 11 source files
  - phase-1/2/3 delivery (semantic search, related panel, bulk sync,
    DPO, graph overlay)
  - extensions beyond original ADR: pi.ruv.io pull/search/status,
    real ruvultra-embedder autodetect with stub fallback, dim-mismatch
    guard in seed-dev.py
  - testing strategy (no mocks, 13 protocol tests + 9 real-Obsidian
    harness checks)
  - phase-4 roadmap with P0-P4 priorities (Q&A, pi write-through,
    selection search, filters, offline queue, etc.)
  - security / privacy notes on bearer token handling

Co-Authored-By: claude-flow <ruv@ruv.net>
New crate ruvector-kalshi: RSA-PSS-SHA256 signer (PKCS#1/#8), GCS/local/env
secret loader with 5-min cache, typed REST + WS DTOs, Kalshi→MarketEvent
normalizer (reuses neural-trader-core), transport-free FeedDecoder,
reqwest-backed REST client with live-trade env gate, and an offline
sign+verify example that validates against the real PEM.

New crate neural-trader-strategies: venue-agnostic Strategy trait, Intent
type, RiskGate (position cap, daily-loss kill, concentration, min-edge,
live gate, cash check), and ExpectedValueKelly prior-driven strategy.

36 unit tests pass across both crates. End-to-end offline validation
confirmed against the real Kalshi PEM via both local and GCS sources.

Co-Authored-By: claude-flow <ruv@ruv.net>
selection search, tag filter, daily recall, offline queue, related
keyboard nav, MCP cross-link

Adds the P0/P1/P2/P3 items from ADR-152 §10:

New modules
-----------
  src/qa-modal.ts        Retrieval-grounded Q&A modal (Cmd+Shift+K).
                         Blends top-k from local brain + pi.ruv.io,
                         dedups by normalized content, renders as
                         context cards with "Open note" / "Insert" /
                         "Copy as quote" actions. Uses real
                         MarkdownRenderer for fidelity.
  src/brain-ops.ts       Brain ops modal — surfaces the previously
                         unused endpoints (/brain/workload,
                         /brain/training-stats, /learning/stats,
                         /brain/store_mode, /brain/info,
                         /brain/index_stats) plus WAL checkpoint +
                         DPO JSONL export.
  src/offline-queue.ts   Persisted queue of pending /memories POSTs.
                         Fills on BrainError.status===0 (network), drains
                         every 30s + opportunistically on each status
                         refresh. Survives reloads via data.json.

Extensions
----------
  src/search-modal.ts    Accepts a `seed` argument (used by the new
                         selection-search command); parses
                         `category:<token>` prefix to filter results
                         server-side-equivalent (client filter after
                         fetch — the local brain lacks ?category= on
                         /brain/search).
  src/related-view.ts    Keyboard nav (↑/↓/j/k move, Enter/o open,
                         r refresh); mouse-enter hints; on-screen
                         hint strip.
  src/pi-client.ts       POST /v1/memories write-through with typed
                         PI_CATEGORIES enum + { custom } newtype;
                         returns { id, quality_score, witness_hash,
                         rvf_segments }.
  src/pi-sync.ts         publishActiveNoteToPi() + category suggest
                         modal; honors new piPullCategory on list
                         pulls.
  src/settings.ts        Adds piPullCategory + an "Agent access (MCP)"
                         section linking to mcp-brain-server / SSE
                         surface with a "Copy MCP endpoint" button.
  src/main.ts            Wires:
                           - Cmd+Shift+K  → Brain Q&A
                           - brain-search-selection (editor callback)
                           - brain-ops modal
                           - pi.ruv.io: publish current note
                           - brain-daily-recall (generates
                             Brain/Recall/Recall-YYYY-MM-DD.md)
                           - brain-offline-queue-flush manual retry
                         Status bar shows "· N queued" when pending.

Indexer → offline queue
-----------------------
  indexer.ts: catches BrainError status=0 on createMemory, enqueues the
  pending write (deduped by path) rather than losing it. Non-network
  errors (422, 500) still surface.

Tests
-----
  tests/protocol/pi-server.test.ts: 2 new tests — POST /v1/memories
  write-through (gated on BRAIN_API_KEY, 40s timeout for server-side
  RVF segmentation + DP noising) and 422-on-bogus-category.
  tests/e2e/harness/main.ts: 2 new harness checks — phase-4 commands
  registered + offline queue API accessible.
  tests/e2e/obsidian-e2e.test.ts: min-expected-checks bumped to 10/11.

Verified
--------
  - 15/15 protocol tests pass (9 local brain + 6 pi incl. write-through)
  - 11/11 real-Obsidian harness checks pass under xvfb
  - tsc + esbuild clean; bundle now 55 KB

Co-Authored-By: claude-flow <ruv@ruv.net>
ADR-152
  - Adds "Beyond the original ADR" entry for pi write-through
  - New "Phase 4 — advanced capabilities" section documenting every
    item from the phase-4 roadmap now shipped in 31c865c: Q&A modal,
    selection search, tag filter, pi category filter, offline queue,
    Related keyboard nav, Brain Ops dashboard, daily recall, MCP
    cross-link
  - Roadmap shortened to Phase-5 leftovers: jump-to-passage, wikilink
    suggestions, memory explorer, MMR, multi-brain, canvas, conflict
    detection
  - New "Distribution" section pointing at ruvnet/obsidian-brain
    (v0.1.0 tagged, release workflow auto-publishes assets)

README
  - BRAT install now points at ruvnet/obsidian-brain instead of a path
    into ruvnet/RuVector

Dist repo (ruvnet/obsidian-brain):
  - Tag v0.1.0 pushed
  - Release created with main.js (54.9 KB), manifest.json, styles.css,
    versions.json
  - Release + Test workflows pass green

Co-Authored-By: claude-flow <ruv@ruv.net>
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