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@ratschlab

Biomedical Informatics at ETH Zurich

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  1. RGAN RGAN Public archive

    Recurrent (conditional) generative adversarial networks for generating real-valued time series data.

    Python 656 180

  2. metagraph metagraph Public

    Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

    C++ 230 26

  3. SOM-VAE SOM-VAE Public

    TensorFlow implementation of the SOM-VAE model as described in https://arxiv.org/abs/1806.02199

    Python 198 32

  4. GP-VAE GP-VAE Public

    TensorFlow implementation for the GP-VAE model described in https://arxiv.org/abs/1907.04155

    Python 144 30

  5. spladder spladder Public

    Tool for the detection and quantification of alternative splicing events from RNA-Seq data.

    Python 113 35

  6. DeepSpot DeepSpot Public

    DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and single-cell (Xenium) resolution.

    Jupyter Notebook 79 22

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