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3 changes: 3 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -61,6 +61,9 @@
scipy sparse matrices in scipy 1.14.
* Fix `methods/geneformer` erroring with a 404 on every dictionary and model file: upstream reorganised the repo for
Geneformer V2 and dropped the gc95M assets from `main`, so pin the downloads to the last revision that has them.
* Give `methods/fadvi` a `gpu` label. Without one it was scheduled on the CPU partition with no GPU attached, so it
trained on the CPU and hit its walltime on every dataset.
* Give `methods/scalex` a `midcpu` label instead of `lowcpu`. It is CPU-bound only because its engine has no CUDA.

* Split Scanorama into two methods/scores
- Split Scanorama into embedding (integrate) and count-correction (correct) modes, instead of running both together.
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2 changes: 1 addition & 1 deletion src/methods/fadvi/config.vsh.yaml
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Expand Up @@ -97,4 +97,4 @@ runners:
# Allows turning the component into a Nextflow module / pipeline.
- type: nextflow
directives:
label: [midtime,midmem,midcpu]
label: [hightime, midmem, midcpu, gpu]
2 changes: 1 addition & 1 deletion src/methods/scalex/config.vsh.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -33,4 +33,4 @@ runners:
- type: executable
- type: nextflow
directives:
label: [lowmem, lowcpu, hightime]
label: [lowmem, midcpu, hightime]
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