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45 changes: 45 additions & 0 deletions src/ontology/uberon-edit.obo
Original file line number Diff line number Diff line change
Expand Up @@ -225244,6 +225244,51 @@ is_a: UBERON:0006914 ! squamous epithelium
relationship: has_part CL:4030023 ! respiratory tract hillock cell
relationship: part_of UBERON:0007196 ! tracheobronchial tree

[Term]
id: UBERON:8930000
name: inner cortex of lens
def: "A zone of the lens cortex that lies immediately external to the lens nucleus and internal to the outer cortex of lens. It is composed of older, fully denucleated lens fibre cells whose lamellae remain largely intact but which are more compacted than those of the outer cortex." [PMID:10550792, PMID:20171212]
comment: Equivalent to the 'deep cortex of lens' (cortex profundus) in FMA. The boundary with the lens nucleus is a continuous gradient of fibre-cell age and compaction but is reliably visible as an optical discontinuity on Scheimpflug/slit-lamp imaging.
subset: added_by_HRA
subset: human_reference_atlas
subset: pheno_slim
synonym: "cortex profundus lentis" EXACT OMO:0003011 [FMA:280216]
synonym: "deep cortex of lens" EXACT [FMA:280216]
xref: FMA:280216
is_a: UBERON:0034944 ! zone of organ
relationship: composed_primarily_of CL:0011004 ! lens fiber cell
relationship: dc-contributor https://orcid.org/0000-0002-2999-0103
relationship: part_of UBERON:0000389 ! lens cortex
relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens
relationship: surrounded_by UBERON:8930001 ! outer cortex of lens
relationship: surrounds UBERON:0000390 ! lens nucleus
property_value: dcterms-date "2026-05-25T00:00:00Z" xsd:dateTime
property_value: term_tracker_item "https://github.com/obophenotype/uberon/pull/3713" xsd:anyURI
created_by: dragon-ai-agent

[Term]
id: UBERON:8930001
name: outer cortex of lens
def: "A zone of the lens cortex that lies immediately beneath the lens capsule and epithelium and surrounds the inner cortex of lens. It is composed of the most recently differentiated lens fibre cells, added from the lens epithelium at the equator; it contains the remodelling and transition zones in which fibre cells lose their nuclei." [PMID:10550792, PMID:19357350]
comment: Equivalent to the 'superficial cortex of lens' (cortex superficialis) in FMA. The outer cortex is the site of ongoing lens fibre cell maturation, including the remodelling zone (RZ) and transition zone (TZ) described by Lim et al. 2009 (PMID:19357350).
subset: added_by_HRA
subset: human_reference_atlas
subset: pheno_slim
synonym: "cortex superficialis lentis" EXACT OMO:0003011 [FMA:280212]
synonym: "superficial cortex of lens" EXACT [FMA:280212]
xref: FMA:280212
is_a: UBERON:0034944 ! zone of organ
relationship: adjacent_to UBERON:0001804 ! capsule of lens
relationship: adjacent_to UBERON:0005614 ! lens anterior epithelium
relationship: composed_primarily_of CL:0011004 ! lens fiber cell
relationship: dc-contributor https://orcid.org/0000-0002-2999-0103
relationship: part_of UBERON:0000389 ! lens cortex
relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens
relationship: surrounds UBERON:8930000 ! inner cortex of lens
property_value: dcterms-date "2026-05-25T00:00:00Z" xsd:dateTime
property_value: term_tracker_item "https://github.com/obophenotype/uberon/pull/3713" xsd:anyURI
created_by: dragon-ai-agent

[Typedef]
id: aboral_to
name: aboral to
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