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Pull requests: nf-core/tools

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Pull requests list

VSCode: add recommended extensions, fix link to admonition styling CSS for markdown previews template nf-core pipeline/component template
#4455 opened Aug 26, 2026 by ewels Member Loading…
1 of 4 tasks
2
Add nf-core pipelines containers create-configs
#4454 opened Aug 25, 2026 by ewels Member Loading…
3 of 4 tasks
1
Round-trip ci: block in .nf-core.yml WIP Work in progress
#4453 opened Aug 24, 2026 by ewels Member • Draft
3 of 4 tasks
1
Point Renovate at the public org preset
#4451 opened Aug 20, 2026 by edmundmiller Contributor Loading…
Fix/4447 linting supressed
#4450 opened Aug 20, 2026 by JulianFlesch Contributor Loading…
4 tasks
@JulianFlesch
1
Add basePackages to container metadata
#4449 opened Aug 19, 2026 by matthdsm Contributor Loading…
4 tasks
4
Remove ext.use_gpu remnants (superseded by task.accelerator)
#4445 opened Aug 17, 2026 by mahesh-panchal Member Loading…
1
Add support to Apple container in tools
#4444 opened Aug 16, 2026 by mribeirodantas Member Loading…
3 of 4 tasks
@mribeirodantas
18
Fix the always-empty Nextflow version in the CodSpeed workflow
#4442 opened Aug 12, 2026 by FelixKrueger Loading…
2
Accept a bare pull_request: in the nf-test workflow trigger
#4441 opened Aug 11, 2026 by FelixKrueger Loading…
1
Bump cryptography from 49.0.0 to 50.0.0 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4439 opened Aug 5, 2026 by dependabot Bot Loading…
Update mcr.microsoft.com/devcontainers/miniconda Docker digest to 26f4e9d
#4438 opened Aug 2, 2026 by renovate Bot Loading…
1 task
Update GitHub Actions (major)
#4437 opened Aug 1, 2026 by renovate Bot Loading…
1 task
1
Clear the nf-test PR comment once its failure is fixed
#4436 opened Aug 1, 2026 by FelixKrueger Loading…
Update pre-commit hooks
#4435 opened Aug 1, 2026 by renovate Bot Loading…
1 task
1
Update mcr.microsoft.com/devcontainers/base Docker tag to v2.1.13
#4434 opened Aug 1, 2026 by renovate Bot Loading…
1 task
Update GitHub Actions
#4433 opened Jul 31, 2026 by renovate Bot Loading…
1 task
1
bump to 4.1.1dev
#4432 opened Jul 30, 2026 by mashehu Contributor Loading…
Use components.json instead of github repo as modules version cache
#4396 opened Jul 16, 2026 by mashehu Contributor • Draft
2
Do not run test with NXF_VER latest-everything on releases
#4393 opened Jul 14, 2026 by maxulysse Member Loading…
4 tasks
3
fix: preserve string types in schema builder
#4392 opened Jul 12, 2026 by sapunyangkut Loading…
3 tasks done
Fix false nf-test failure on empty stderr
#4391 opened Jul 12, 2026 by sapunyangkut Loading…
3 tasks done
Add TODO for module tags without metadata
#4390 opened Jul 12, 2026 by sapunyangkut Loading…
1 of 2 tasks
1
Migrate pipeline lint rules to AST-grep
#4381 opened Jul 7, 2026 by edmundmiller Contributor Loading… 4.2.0
1
Flag legacy versions emits
#4380 opened Jul 7, 2026 by edmundmiller Contributor Loading… 4.2.0
1
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