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Pull requests: nf-core/modules

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Pull requests list

Update to topics hicexplorer
#11710 opened May 19, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
Update to topics hmtnote
#11709 opened May 19, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
Update test for hicap
#11708 opened May 19, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
Add Zarr support to scanpy/pca
#11697 opened May 19, 2026 by ehsanestaji Contributor • Draft
9 of 14 tasks
feat(simpleaf): bump to 0.24.1 with Seqera Wave container and topic-channel versions
#11696 opened May 19, 2026 by an-altosian Contributor Loading…
4 tasks done
1
feat(rpbp): add 7 rpbp modules + fasta_gtf_bam_rpbp subworkflow size/xl
#11695 opened May 19, 2026 by pinin4fjords Member • Draft
Add finaletoolkit/wps
#11691 opened May 19, 2026 by lbeltrame Contributor Loading…
11 of 17 tasks
@lbeltrame
Mobsuite typer
#11664 opened May 17, 2026 by jfy133 Member Loading…
17 tasks
1
New module: GRIMER
#11663 opened May 17, 2026 by Jonahnki Loading…
5 tasks done
1
16
Add new module: flumut size/m
#11662 opened May 17, 2026 by EdoardoGiussani Loading…
9 of 11 tasks
1
Test: Phold
#11661 opened May 17, 2026 by anna-parker • Draft
17 tasks
3
Add virusrecom module for viral recombination detection
#11658 opened May 17, 2026 by haggaikelisha-ai Loading…
4 tasks done
21
Add gcta/makegrm module
#11650 opened May 15, 2026 by lyh970817 Contributor Loading…
14 tasks done
New module: SAVANA/RUN Ready for Review
#11649 opened May 15, 2026 by manascripts Member Loading…
11 of 13 tasks
Update parabricks mutectcaller for sarek
#11647 opened May 14, 2026 by gburnett-nvidia Contributor Loading…
Allow cellranger renaming to ignore irregular filename patterns enhancement New feature or request
#11646 opened May 14, 2026 by tgelafr-pfzr Contributor Loading…
5 of 7 tasks
1
@tgelafr-pfzr
10
Amulety modules bump versions
#11645 opened May 14, 2026 by ggabernet Member Loading…
17 tasks
7
Add mifaser Ready for Review
#11643 opened May 14, 2026 by vinisalazar Contributor Loading…
10
Add custom clustering
#11642 opened May 13, 2026 by dbaku42 Loading…
3 tasks done
new module DeepMAsED
#11629 opened May 12, 2026 by SkyLexS Contributor Loading…
13 of 17 tasks
@SkyLexS
New module: octopusv/merge Ready for Review
#11617 opened May 12, 2026 by manascripts Member Loading…
9 of 14 tasks
1
11
Add primerprospector_analyzeprimers size/m
#11615 opened May 12, 2026 by vagkaratzas Contributor Loading…
14 of 17 tasks
2
Simplify dream contrast handling
#11584 opened May 11, 2026 by grst Member Loading…
17 tasks
13
Add HTSLIB/BGZIPTABIX and deprecate redundant modules new module Adding a new module size/xl
#11571 opened May 8, 2026 by itrujnara Contributor Loading…
24 of 26 tasks
41
Support matrix.mtx.gz cellbender remove-background input
#11565 opened May 7, 2026 by alecw Loading…
4 of 13 tasks
3
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