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[Fix] Fix some links and GKlib.so in Dockerfile.intel #7292

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[Fix] Fix some links and GKlib.so in Dockerfile.intel #7292

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30 changes: 20 additions & 10 deletions Dockerfile.intel
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Original file line number Diff line number Diff line change
Expand Up @@ -34,14 +34,14 @@
ENV CMPLR_ROOT=${ONEAPI_ROOT}/compiler/latest

# Set library paths and include paths
ENV LIBRARY_PATH=${ONEAPI_ROOT}/tbb/latest/lib/intel64/gcc4.8:${ONEAPI_ROOT}/mpi/latest/lib:${MKLROOT}/lib/intel64:${ONEAPI_ROOT}/compiler/latest/lib/:${LIBRARY_PATH}

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GitHub Actions / build_container_and_push (intel)

Variables should be defined before their use 

UndefinedVar: Usage of undefined variable '$LIBRARY_PATH'
More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/
ENV LD_LIBRARY_PATH=${ONEAPI_ROOT}/tbb/latest/lib/intel64/gcc4.8:${ONEAPI_ROOT}/mpi/latest/lib:${MKLROOT}/lib/intel64:${ONEAPI_ROOT}/compiler/latest/lib/:${LD_LIBRARY_PATH}

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Variables should be defined before their use 

UndefinedVar: Usage of undefined variable '$LD_LIBRARY_PATH'
More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/
ENV PATH=${ONEAPI_ROOT}/vtune/latest/bin64:${ONEAPI_ROOT}/mpi/latest/bin:${MKLROOT}/bin/intel64:${ONEAPI_ROOT}/compiler/latest/bin:${PATH}
ENV CPATH=${MKLROOT}/include:${ONEAPI_ROOT}/mpi/latest/include:${CPATH}

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Variables should be defined before their use 

UndefinedVar: Usage of undefined variable '$CPATH' (did you mean $PATH?)
More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/
ENV PKG_CONFIG_PATH=${MKLROOT}/lib/pkgconfig:${ONEAPI_ROOT}/mpi/latest/lib/pkgconfig:${PKG_CONFIG_PATH}

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Variables should be defined before their use 

UndefinedVar: Usage of undefined variable '$PKG_CONFIG_PATH'
More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/

# Set CMAKE related paths
ENV CMAKE_PREFIX_PATH=${ONEAPI_ROOT}/tbb/latest:${MKLROOT}/lib/cmake:${ONEAPI_ROOT}/dpl/latest/lib/cmake:${ONEAPI_ROOT}/dnnl/latest/lib/cmake:${ONEAPI_ROOT}/dal/latest:${ONEAPI_ROOT}/compiler/latest:${CMAKE_PREFIX_PATH}

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Variables should be defined before their use 

UndefinedVar: Usage of undefined variable '$CMAKE_PREFIX_PATH'
More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/

SHELL ["/bin/bash", "-c"]
ENV CC=mpiicx CXX=mpiicpx FC=mpiifx
Expand Down Expand Up @@ -88,19 +88,23 @@
ENV SUPERLU_DIST32_ROOT=/usr/local/superlu_dist32-${SUPERLU_DIST_VERSION}

# 2. install GKlib
RUN wget https://codeload.github.com/KarypisLab/GKlib/zip/refs/heads/${GKLIB_VERSION} -O GKlib-${GKLIB_VERSION}.zip && \
RUN wget --no-check-certificate --quiet --tries=3 --timeout=30 \
https://codeload.github.com/KarypisLab/GKlib/zip/refs/heads/${GKLIB_VERSION} \
-O GKlib-${GKLIB_VERSION}.zip && \
unzip GKlib-${GKLIB_VERSION}.zip && \
cd GKlib-${GKLIB_VERSION} && \
make config shared=1 prefix=${GKLIB_ROOT} openmp=set && \
make -j$(nproc) && \
make install && \
ls ${GKLIB_ROOT}/lib && \
cp ${GKLIB_ROOT}/lib/libGKlib.so.0 ${GKLIB_ROOT}/lib/libGKlib.so && \
cp -n ${GKLIB_ROOT}/lib/libGKlib.so.0 ${GKLIB_ROOT}/lib/libGKlib.so || true && \
cd / && rm -rf GKlib-${GKLIB_VERSION} GKlib-${GKLIB_VERSION}.zip
#.so file CANNOT be found otherwise.
# 2. install METIS
RUN export LD_LIBRARY_PATH=${GKLIB_ROOT}/lib:${LD_LIBRARY_PATH} && \
wget https://codeload.github.com/KarypisLab/METIS/zip/refs/heads/${METIS_VERSION} -O METIS-${METIS_VERSION}.zip && \
wget --no-check-certificate --quiet --tries=3 --timeout=30 \
https://codeload.github.com/KarypisLab/METIS/zip/refs/heads/${METIS_VERSION} \
-O METIS-${METIS_VERSION}.zip && \
unzip METIS-${METIS_VERSION}.zip && \
cd METIS-${METIS_VERSION} && \
make config shared=1 prefix=${METIS32_ROOT} gklib_path=${GKLIB_ROOT} && \
Expand All @@ -110,7 +114,9 @@

# 3. install ParMETIS
RUN export LD_LIBRARY_PATH=${METIS32_ROOT}/lib:${GKLIB_ROOT}/lib:${LD_LIBRARY_PATH} && \
wget https://codeload.github.com/KarypisLab/ParMETIS/zip/refs/heads/${PARMETIS_VERSION} -O ParMETIS-${PARMETIS_VERSION}.zip && \
wget --no-check-certificate --quiet --tries=3 --timeout=30 \
https://codeload.github.com/KarypisLab/ParMETIS/zip/refs/heads/${PARMETIS_VERSION} \
-O ParMETIS-${PARMETIS_VERSION}.zip && \
unzip ParMETIS-${PARMETIS_VERSION}.zip && \
cd ParMETIS-${PARMETIS_VERSION} && \
make config shared=1 prefix=${PARMETIS32_ROOT} gklib_path=${GKLIB_ROOT} metis_path=${METIS32_ROOT} && \
Expand All @@ -119,7 +125,9 @@
cd / && rm -rf ParMETIS-${PARMETIS_VERSION} ParMETIS-${PARMETIS_VERSION}.zip

# 4. install SuperLU_DIST
RUN wget https://codeload.github.com/xiaoyeli/superlu_dist/tar.gz/refs/tags/v${SUPERLU_DIST_VERSION} -O v${SUPERLU_DIST_VERSION}.tar.gz && \
RUN wget --no-check-certificate --quiet --tries=3 --timeout=30 \
https://codeload.github.com/xiaoyeli/superlu_dist/tar.gz/refs/tags/v${SUPERLU_DIST_VERSION} \
-O v${SUPERLU_DIST_VERSION}.tar.gz && \
tar -xzf v${SUPERLU_DIST_VERSION}.tar.gz && \
cd superlu_dist-${SUPERLU_DIST_VERSION} && \
mkdir build && cd build && \
Expand All @@ -138,7 +146,7 @@
-DCMAKE_C_FLAGS="-O3 -fopenmp" \
-DCMAKE_CXX_FLAGS="-O3 -fopenmp" \
-DXSDK_ENABLE_Fortran=ON \
-DCMAKE_Fortran_COMPILER=mpiifx && \
-DCMAKE_Fortran_COMPILER=mpiifx && \
make -j$(nproc) && \
make install && \
cd / && rm -rf superlu_dist-${SUPERLU_DIST_VERSION} v${SUPERLU_DIST_VERSION}.tar.gz
Expand All @@ -153,7 +161,9 @@
export PKG_CONFIG_PATH=${SUPERLU_DIST32_ROOT}/lib/pkgconfig:${METIS32_ROOT}/lib/pkgconfig:${PARMETIS32_ROOT}/lib/pkgconfig:${GKLIB_ROOT}/lib/pkgconfig:${PKG_CONFIG_PATH} && \
export CPATH=${SUPERLU_DIST32_ROOT}/include:${PARMETIS32_ROOT}/include:${METIS32_ROOT}/include:${GKLIB_ROOT}/include:${CMAKE_PREFIX_PATH} && \
export CMAKE_PREFIX_PATH=${SUPERLU_DIST32_ROOT}:${PARMETIS32_ROOT}:${METIS32_ROOT}:${GKLIB_ROOT}:${CMAKE_PREFIX_PATH} && \
wget https://codeload.github.com/MCresearch/pexsi/tar.gz/refs/heads/${PEXSI_VERSION} -O pexsi-${PEXSI_VERSION}.tar.gz && \
wget --no-check-certificate --quiet --tries=3 --timeout=30 \
https://codeload.github.com/MCresearch/pexsi/tar.gz/refs/heads/${PEXSI_VERSION} \
-O pexsi-${PEXSI_VERSION}.tar.gz && \
tar -xzf pexsi-${PEXSI_VERSION}.tar.gz && \
cd pexsi-${PEXSI_VERSION} && \
sed -i 's/^add_pexsi_f_example_exe/# add_pexsi_f_example_exe/g' fortran/CMakeLists.txt && \
Expand All @@ -169,9 +179,9 @@
make install && \
cd / && rm -rf pexsi-${PEXSI_VERSION} pexsi-${PEXSI_VERSION}.tar.gz

ENV LD_LIBRARY_PATH=${GKLIB_ROOT}/lib:${METIS32_ROOT}/lib:${PARMETIS32_ROOT}/lib:${SUPERLU32_DIST_ROOT}/lib:${PEXSI32_ROOT}/lib:${LD_LIBRARY_PATH}
ENV PKG_CONFIG_PATH=${GKLIB_ROOT}/lib/pkgconfig:${METIS32_ROOT}/lib/pkgconfig:${PARMETIS32_ROOT}/lib/pkgconfig:${SUPERLU32_DIST_ROOT}/lib/pkgconfig:${PEXSI32_ROOT}/lib/pkgconfig:${PKG_CONFIG_PATH}
ENV CPATH=${GKLIB_ROOT}/include:${METIS32_ROOT}/include:${PARMETIS32_ROOT}/include:${SUPERLU32_DIST_ROOT}/include:${PEXSI32_ROOT}/include:${CPATH}
ENV LD_LIBRARY_PATH=${GKLIB_ROOT}/lib:${METIS32_ROOT}/lib:${PARMETIS32_ROOT}/lib:${SUPERLU_DIST32_ROOT}/lib:${PEXSI32_ROOT}/lib:${LD_LIBRARY_PATH}
ENV PKG_CONFIG_PATH=${GKLIB_ROOT}/lib/pkgconfig:${METIS32_ROOT}/lib/pkgconfig:${PARMETIS32_ROOT}/lib/pkgconfig:${SUPERLU_DIST32_ROOT}/lib/pkgconfig:${PEXSI32_ROOT}/lib/pkgconfig:${PKG_CONFIG_PATH}
ENV CPATH=${GKLIB_ROOT}/include:${METIS32_ROOT}/include:${PARMETIS32_ROOT}/include:${SUPERLU_DIST32_ROOT}/include:${PEXSI32_ROOT}/include:${CPATH}
ENV CMAKE_PREFIX_PATH=${PEXSI32_ROOT}:${SUPERLU_DIST32_ROOT}:${PARMETIS32_ROOT}:${METIS32_ROOT}:${GKLIB_ROOT}:${CMAKE_PREFIX_PATH}

### -DCMAKE_C_COMPILER=mpiicc \
Expand Down
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