Skip to content
View d33bs's full-sized avatar
🪴
Software gardening...
🪴
Software gardening...
84 followers · 227 following

Achievements

Achievement: Pull Sharkx4Achievement: StarstruckAchievement: Pair Extraordinairex4Achievement: YOLOAchievement: Quickdraw

Achievements

Achievement: Pull Sharkx4Achievement: StarstruckAchievement: Pair Extraordinairex4Achievement: YOLOAchievement: Quickdraw

Organizations

@conda-forge @cytomining @sphinx-contrib @nf-core @University-of-Colorado-Anschutz-Denver @UCBoulder @CU-DBMI @WayScience @software-gardening @xqlsystems

Block or report d33bs

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
d33bs/README.md

Hi, I'm Dave 👋

I'm a research software engineer building open-source tools for scientific discovery, with a focus on bioimaging, single-cell analysis, and sustainable software practices.

I've been on Github for 13 years. During that time I've contributed to 110 repositories, opened 819 issues, performed 1260 code reviews, and have opened 1124 pull requests.

I maintain 19 Python packages on PyPI (downloaded 5,433 times last month), have 31 archived releases on Zenodo, and my work has received 74 citations.

Pinned Loading

  1. WayScience/ome-arrow WayScience/ome-arrow Public

    Using OME specifications with Apache Arrow for fast, queryable, and language agnostic bioimage data.

    Python 7 1

  2. WayScience/iceberg-bioimage WayScience/iceberg-bioimage Public

    A format-agnostic framework for cataloging and querying bioimaging data (Parquet, OME-Zarr, OME-TIFF) with Apache Iceberg

    Python 2 1

  3. cytomining/CytoTable cytomining/CytoTable Public

    Harmonize high-content image analysis tool outputs for processing with Pycytominer and other Cytomining tools.

    Python 20 6

  4. cytomining/CytoDataFrame cytomining/CytoDataFrame Public

    An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.

    Python 13 2

  5. cytomining/pycytominer cytomining/pycytominer Public

    Python package for image-based profiling

    Python 143 41

  6. software-gardening/almanack software-gardening/almanack Public

    An open-source handbook of applied guidance and tools for sustainable software development and maintenance.

    Jupyter Notebook 24 7