Upgrade SQLite to version 3.53.4

[joshthoward]

A few things to keep in mind

• SQLite version 3.53.4 requires a couple more generated source files in order to compile.
• The default Bazel patch_tool is not stable across environments, so I had to specify which patch tool to use.
• The old patch patches/sqlite/0004-invalid-wal-on-rollback-fix.patch, was upstreamed to SQLite.
• The new patch patches/sqlite/0004-authorizer-rename-to-destination-name.patch (previously 0005) now includes modifications to newly added tests in SQLite.

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