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New class uses nf-core samplesheet convention with fromSRA and ploidy as per-dataset props. taxonId removed (looked up at runtime). Old dnaSeqExperimentFromAccession and dnaSeqExperimentFromLocal retained with DEPRECATED comments pending organism XML migration. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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New class uses nf-core samplesheet convention with fromSRA and ploidy as per-dataset props. taxonId removed (looked up at runtime). Old dnaSeqExperimentFromAccession and dnaSeqExperimentFromLocal retained with DEPRECATED comments pending organism XML migration.