SchriderLab
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Timesweeper
Timesweeper PublicPython package for detecting positive selective sweeps using time-series genomics sampling data.
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Tree_learning
Tree_learning PublicCode for accurate inference of tree topologies from multiple sequence alignments using deep learning
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drosophila_phylogeny
drosophila_phylogeny PublicPipeline overview and code (including BLT-DCT program) for widespread introgression across a phylogeny of 155 Drosophila genomes
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timesweeper-experiments
timesweeper-experiments PublicRepo for experiments for the TimeSweeper manuscript.
Repositories
- extinction_therapy_toptimal Public
This project aims to develop an algorithm based on optimal stopping theory (OST) to predict the optimal time for treatment switching in two-strike cancer therapy.
- popgenml Public
Repository for simulating population genetic data and training neural networks to do inference.
- geneConvSweeps Public
Code for simulation study exaiming the impact of gene conversion on the "softness" of selective sweeps
- TreeSeqPopGenInference Public
Exploring how to use tree sequences for multiple population genetic inference tasks.
- cancer_sims Public
- selectionScanExercise Public
- evoMLWorkshop2024 Public
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