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RichardObi/README.md

Hi, I'm Richard ๐Ÿ‘‹๐Ÿพ

Teaching models to create and segment medical scans, and worrying about whether the results can be trusted.

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I build generative models for medical imaging, synthesising MRI, mammograms, and CT, sometimes to sidestep a contrast injection, sometimes just because real data is scarce and locked away. And because fake medical images are only useful if you can trust them, I like to spend a lot of time on how to measure that. ๐Ÿ”ฌ

These days I'm a postdoc working on AI for radiation oncology at TUM in Munich, trying to get visionโ€“language models to help plan cancer treatment. Before that I did my PhD on generative models for breast imaging in sunny Barcelona ๐ŸŒ‡, and before that I spent a few years at IBM building AI systems (and accidentally collecting a few patents like this one along the way).


๐Ÿงฐ Things you might find useful

If you're building in medical imaging, some of these might be useful, but if not, reach out to let me know what we should be building together:

๐Ÿฉป medigan โ€” a model zoo of pretrained generative models for medical iamging. pip install medigan, pick a model, get synthetic mammograms, MRI, x-rays, or endoscopy images. Built so labs can share models instead of locked-away data. โ†’ docs here

๐Ÿ“ frd-score โ€” a way to measure whether your synthetic medical images are any good, using radiomic features instead of metrics borrowed from natural image photos. โ†’ project page

๐Ÿ’‰ ccnet & SimulatingDCE โ€” teaching models how contrast flows through breast tissue over time, so we might one day need fewer injections by turning non-contrast MRI into contrast-enhanced MRI โ†’ paper

๐Ÿ”’ mammo_dp โ€” Making differential privacy useful with synthetic data - which actually helps a lot when training differentially private cancer classifiers. โ†’ paper


๐ŸŒฑ A few things I care about

  • Making good tools open, so the next person doesn't start from zero
  • Helping students and newcomers get their first medical-imaging models running
  • Fair AI that works for everyone, not just the patients who look like the training set โ€” I helped to create a guide to be aware of such potential biases called FUTURE-AI.
  • Bringing people together around shared problems โ€” I organise the MAMA-SYNTH challenge at MICCAI to reduce the reliance on contrast agents ๐Ÿ

๐Ÿ’ฌ Come say hi

If any of this is useful to you, or you're stuck on something, open an issue or reach out. I'm always happy to help you get results.


๐Ÿ“ Also: if you're ever at a conference and want to lose at table tennis, I'm your guy.

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  1. frd-score frd-score Public

    Official implementation of the Frรฉchet Radiomic Distance

    Python 35 2

  2. medigan medigan Public

    medigan - A Python Library of Pretrained Generative Models for Medical Image Synthesis

    Python 203 23

  3. mammo_dp mammo_dp Public

    Official repository of "Enhancing the Utility of Privacy-Preserving Cancer Classification using Synthetic Data"

    Python 1 1

  4. pre_post_synthesis pre_post_synthesis Public

    Official repository for "Pre- to Post-Contrast Breast MRI Synthesis for Enhanced Tumour Segmentation"

    Python 13 1

  5. zuzaanto/mammo_gans_iwbi2022 zuzaanto/mammo_gans_iwbi2022 Public

    Official codebase of IWBI paper:Sharing Generative Models Instead of Private Data: A Simulation Study on Mammography Patch Classification

    Python 9 1

  6. ccnet ccnet Public

    Official repository of "Towards Learning Contrast Kinetics with Multi-Condition Latent Diffusion Models"

    Python 10 3