Skip to content

Release 2026.08.0 #121

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
aylward merged 1 commit into from
Aug 14, 2026
Merged

Release 2026.08.0 #121

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions pyproject.toml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"

[project]
name = "physiotwin4d"
version = "2026.07.3"
version = "2026.08.0"
description = "Methods, workflows, tutorials, and CLI for creating personalized physiological digital twins from 3D/4D medical images"
authors = [
{name = "Stephen R. Aylward", email = "saylward@nvidia.com"}
Expand Down Expand Up @@ -231,7 +231,7 @@ physiotwin4d-visualize-pca-modes = "physiotwin4d.cli.visualize_pca_modes:main"
where = ["src"]

[tool.bumpver]
current_version = "2026.07.3"
current_version = "2026.08.0"
version_pattern = "YYYY.0M.PATCH[PYTAGNUM]"
commit_message = "Bump version {old_version} -> {new_version}"
commit = false
Expand Down
2 changes: 1 addition & 1 deletion src/physiotwin4d/__init__.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,7 @@
- PhysioTwin4DBase: Base class with standardized logging and debug settings
"""

__version__ = "2026.07.3"
__version__ = "2026.08.0"

import importlib.util as _importlib_util
import warnings as _warnings
Expand Down
42 changes: 21 additions & 21 deletions statistics.md
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,12 +1,11 @@
# PhysioTwin4D - Software Development Statistics

**Report Generated:** August 13, 2026
**Project Version:** 2026.07.3
**Report Generated:** August 14, 2026
**Project Version:** 2026.08.0
**Status:** Beta (Development Status: 4 - Beta)

Line counts below are total lines per file (`cat | wc -l`), including blanks and
comments. Stating the method matters: the previous revision of this report used
an unstated one, so its figures are not directly comparable to these.
Line counts below are total lines per file (`wc -l`), including blanks and
comments, over Git-tracked files only (`git ls-files`).

---

Expand All @@ -20,9 +19,9 @@ This report summarizes development effort, code quality, and project maturity.

| Metric | Value |
| ------------------------------ | ---------------------------------------------- |
| **Total Lines of Code** | ~74,100 |
| **Development Period** | December 5, 2025 - August 13, 2026 (~8 months) |
| **Total Commits** | 122 |
| **Total Lines of Code** | ~74,800 |
| **Development Period** | December 5, 2025 - August 14, 2026 (~8 months) |
| **Total Commits** | 123 |
| **Primary Developer** | 1 (Stephen Aylward), plus 1 outside contributor |

---
Expand All @@ -33,14 +32,14 @@ This report summarizes development effort, code quality, and project maturity.

| Category | Files | Lines of Code | Percentage |
| ---------------------------------------- | -------------- | -------------- | ---------- |
| **Core Python Source (`src/`)** | 74 files | 29,316 | 39.6% |
| **Test Suite (`tests/`)** | 40 files | 11,601 | 15.7% |
| **Experiment Scripts (`experiments/`)** | 46 files | 9,219 | 12.4% |
| **Tutorial Scripts (`tutorials/`)** | 32 files | 9,107 | 12.3% |
| **Core Python Source (`src/`)** | 74 files | 29,345 | 39.2% |
| **Test Suite (`tests/`)** | 40 files | 12,323 | 16.5% |
| **Experiment Scripts (`experiments/`)** | 46 files | 9,219 | 12.3% |
| **Tutorial Scripts (`tutorials/`)** | 32 files | 9,207 | 12.3% |
| **Utility Scripts (`utils/`)** | 3 files | 1,739 | 2.3% |
| **Documentation (`docs/*.rst`)** | 85 files | 8,871 | 12.0% |
| **Markdown (repo-wide READMEs, guides)** | 38 files | 4,204 | 5.7% |
| **TOTAL** | **318 files** | **~74,100** | **100%** |
| **Documentation (`docs/*.rst`)** | 85 files | 8,892 | 11.9% |
| **Markdown (repo-wide READMEs, guides)** | 35 files | 4,051 | 5.4% |
| **TOTAL** | **315 files** | **~74,800** | **100%** |

The 32 files under `tutorials/` are 29 numbered tutorial scripts plus 3
per-organ parameter modules (`parameters_heart_ct_kcl.py`,
Expand All @@ -57,18 +56,19 @@ tutorials are straightforward top-to-bottom scripts.
| Module | Lines | Purpose |
| ------------------------------------------------ | ----- | ----------------------------------------------- |
| `usd_tools.py` | 1,523 | USD file manipulation and inspection |
| `contour_tools.py` | 1,419 | Mesh extraction and contour manipulation |
| `contour_tools.py` | 1,415 | Mesh extraction and contour manipulation |
| `register_models_pca.py` | 1,117 | PCA-based shape model registration |
| `convert_vtk_to_usd.py` | 1,071 | High-level VTK -> USD converter |
| `transform_tools.py` | 1,065 | ITK transform utilities |
| `usd_anatomy_tools.py` | 1,053 | OmniSurface materials for labeled anatomy |
| `workflow_fit_statistical_model_to_patient.py` | 1,049 | Model-to-patient registration workflow |
| `transform_tools.py` | 1,048 | ITK transform utilities |
| `segment_nv_segment_ct_mri.py` | 695 | NVIDIA CT/MRI segmentation bundle bridge |
| `register_images_ants.py` | 691 | ANTs-based image registration |
| `image_tools.py` | 685 | Image I/O, resampling, preprocessing |
| `register_images_base.py` | 685 | Shared registration base class |
| `workflow_infer_movement.py` | 625 | Predicted displacements back into geometry |
| `register_images_greedy.py` | 593 | Greedy classical deformable registration |
| `workflow_evaluate_movement.py` | 550 | Per-structure scoring against acquired frames |
| `workflow_evaluate_movement.py` | 565 | Per-structure scoring against acquired frames |
| `vtk_to_usd/` subpackage | 2,717 | Low-level VTK -> USD building blocks (9 files) |
| `cli/` subpackage | 2,454 | CLI entry-point scripts (11 commands, 13 files) |

Expand Down Expand Up @@ -175,8 +175,8 @@ PhysioTwin4D operates across several technically demanding domains:

| Type | Count | Lines |
| ---------------------- | ------------------------ | ----- |
| **Markdown files** | 38 (repo-wide READMEs, guides) | 4,204 |
| **reStructuredText** | 85 files under `docs/` | 8,871 |
| **Markdown files** | 35 (repo-wide READMEs, guides) | 4,051 |
| **reStructuredText** | 85 files under `docs/` | 8,892 |
| **Python docstrings** | All public modules | embedded |
| **Knowledge graph** | `graphify-out/`, refreshed via `graphify update .` | n/a (not checked in) |

Expand Down Expand Up @@ -207,4 +207,4 @@ unattended.

---

**Last Updated:** August 13, 2026
**Last Updated:** August 14, 2026
Loading