ci: auto-sync MOSuite subtree

.codeocean/environment.json

@@ -1,6 +1,6 @@
 {
 	"version": 1,
-	"base_image": "codeocean/mosuite:v0.3.0",
+	"base_image": "codeocean/mosuite-minimal:v0.3.1",
 	"post_install": true,
 	"options": {
 		"registry_host_arg": true,

.github/workflows/pull-subtree.yml

@@ -0,0 +1,41 @@
+name: pull-subtree
+
+on:
+  repository_dispatch:
+    types: [release]
+  workflow_dispatch:
+
+jobs:
+  pull-subtree:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        config:
+          - { remote: CCBR/MOSuite, local: code/MOSuite }
+    steps:
+      - name: Generate a token
+        id: generate-token
+        uses: actions/create-github-app-token@v2
+        with:
+          app-id: ${{ vars.CCBR_BOT_APP_ID }}
+          private-key: ${{ secrets.CCBR_BOT_PRIVATE_KEY }}
+          owner: ${{ github.repository_owner }}
+      - uses: actions/checkout@v6
+        with:
+          token: ${{ steps.generate-token.outputs.token }}
+      - name: git config
+        run: |
+          git config --global user.name "CCBR-bot"
+          git config --global user.email "258092125+ccbr-bot@users.noreply.github.com"
+      - name: Pull subtree
+        env:
+          local_branch_name: pull/${{ matrix.config.remote }}
+          remote_branch_name: main # TODO use release ref from repo dispatch payload
+        run: |
+          git switch -c ${{ env.local_branch_name }}
+          git remote add -f subtree-remote ${{ matrix.config.remote }}
+          git fetch subtree-remote main
+          git subtree pull --prefix ${{ matrix.config.local }} subtree-remote ${{ env.remote_branch_name }} --squash
+          git add ${{ matrix.config.local }}
+          git commit -m 'chore: pull subtree from ${{ matrix.config.remote}} @ ${{ env.remote_branch_name}}'
+          gh pr create --fill-first

.github/workflows/push-subtree.yml

@@ -0,0 +1,9 @@
+name: push-subtree
+
+on:
+  repository_dispatch:
+  workflow_dispatch:
+
+jobs:
+  push-subtree:
+    runs-on: ubuntu-latest

.github/workflows/sync-code-ocean.yml

@@ -0,0 +1,9 @@
+name: sync-code-ocean
+
+on:
+  repository_dispatch:
+  workflow_dispatch:
+
+jobs:
+  sync-code-ocean:
+    runs-on: ubuntu-latest

CHANGELOG.md

@@ -2,6 +2,9 @@
 
 ## development version
 
+- The MOSuite package is now available in `code/MOSuite`. (#1)
+- Use MOSuite v0.3.1.
+
 ## v2.0
 
 - Use MOSuite v0.3.0.

code/MOSuite/.Rbuildignore

@@ -0,0 +1,37 @@
+^renv$
+^renv\.lock$
+^_pkgdown\.yml$
+^\.github$
+^\.lintr$
+^\.pre-commit-config\.yaml$
+^\.prettierignore$
+^\.prettierrc$
+^\.Rproj\.user$
+^CITATION\.cff$
+^codemeta\.json$
+^data-raw$
+^doc$
+^Dockerfile$
+^docker$
+^docs$
+^figures$
+^LICENSE\.md$
+^Meta$
+^MOSuite\.Rproj$
+^pkgdown$
+^README\.Rmd$
+^README\.html$
+^README_files$
+^Rplots\.pdf$
+^moo_input\.rds$
+^plot-volc-enh\.json$
+^volc-sum-params\.json$
+^report_files$
+^inst/quarto/report_files$
+^tests/figures$
+^vignettes/figures/$
+^vignettes/memory\.Rmd$
+^vignettes/cli\.Rmd$
+VennDiagram.*\.log
+^[.]?air[.]toml$
+^\.vscode$

code/MOSuite/.gitattributes

@@ -0,0 +1,4 @@
+CITATION.cff linguist-generated
+codemeta.json linguist-generated
+NAMESPACE linguist-generated
+man/ linguist-generated

code/MOSuite/.github/.Rprofile

@@ -0,0 +1 @@
+rlang::global_entrace()

code/MOSuite/.github/.gitignore

@@ -0,0 +1 @@
+*.html