Skip to content

Add cramino test data - #383

Open
aksenia wants to merge 2 commits into
MultiQC:mainfrom
aksenia:add-cramino-test-data
Open

Add cramino test data#383
aksenia wants to merge 2 commits into
MultiQC:mainfrom
aksenia:add-cramino-test-data

Conversation

@aksenia

@aksenia aksenia commented Jul 27, 2026

Copy link
Copy Markdown

Summary

Test fixtures for the new cramino module (MultiQC/MultiQC#3603):

  • example_aligned_karyotype.cramino.txt - based on the example file attached to the issue (aligned ONT adaptive-sampling BAM, run with --karyotype; includes identity stats and a full per-chromosome block). Sample name and internal File name/Path fields anonymised.
  • toy_ubam.cramino.txt - synthetic unaligned (--ubam) output: no identity stats, no karyotype block.
  • toy_estimated_identity.cramino.txt - synthetic output using the "est. identity" label variant cramino emits in one of its identity modes, plus a small karyotype block.
  • toy_no_contigs.cramino.txt - synthetic output covering the # Warning - no contigs found in BAM file! case cramino prints when --karyotype was requested but no contigs were found.

These cover the format variations found by reading cramino's actual source (text_output.rs/metrics.rs), not just the single example in the issue.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant