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Pull request overview
Adjusts the Apptainer build workflow to work when the Snakemake containerization recipe is generated under .test, addressing broken %files paths reported in issue #7.
Changes:
- Run the Apptainer build step from the
.testworking directory. - Update the
apptainer buildinvocation to use paths relative to.test.
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| run: | | ||
| sudo apt-get install -y uidmap | ||
| apptainer build --fakeroot apptainer.sif apptainer.def | ||
| apptainer build --fakeroot ../apptainer.sif ../apptainer.def |
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no, the output from containerize is ./apptainer.def, in root dir.
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closes #7