Merged single-cell workflow and notebooks addition - #96

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KevinMLanderos wants to merge 5 commits into

mainfrom

Commits on Jul 29, 2026

Add single-cell TCR modality (SCintegrated) on top of main
zaidissa
committed
956450c

Commits on Aug 5, 2026

Wire report notebooks into v2, rework timepoint ordering, and establish
KevinMLanderos
committed
a0479b8

Commits on Aug 12, 2026

Cap CPU/memory requests for the single-cell modality processes in tests/nextflow.config, since GitHub Actions runners only have 4 CPUs while conf/base.config requests 8, causing every SC test (VDJ_…
KevinMLanderos
committed
481a871
Remove CONGA module test: known CoNGA library crash on tiny synthetic fixture

KevinMLanderos
and
claude
committed
ab7da22
Add push trigger for v2 branch in workflow
dltamayo
authored
90fdf49