Skip to content
@Integrative-Transcriptomics

Integrative-Transcriptomics

Popular repositories Loading

  1. DamageProfiler DamageProfiler Public

    A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage

    Java 22 3

  2. PTMVision PTMVision Public

    Web application for the interactive visualization and exploration of post-translational modifications of proteins from open and closed search software.

    HTML 7 1

  3. inPHAP inPHAP Public

    Interactive phased haplotype viewer

    Java 6

  4. MUSIAL MUSIAL Public

    Generate comprehensive statistics and alignments, and assess variability at the genome, gene and protein levels, based on VCF files produced from prokaryotic sources.

    Java 5 1

  5. GO-Compass GO-Compass Public

    Visual Navigation of Multiple Lists of GO terms

    JavaScript 4 1

  6. TechnicalReport-AssemblyBestPractice TechnicalReport-AssemblyBestPractice Public

    In this technical report we elucidate/evaluate best practices for hybrid/long-read assembly.

    Jupyter Notebook 3

Repositories

Showing 10 of 59 repositories
  • GO-Compass-Trrack Public Forked from Integrative-Transcriptomics/GO-Compass

    Visual navigation of multiple lists of GO terms with Trrack.js for provenance tracking.

    Integrative-Transcriptomics/GO-Compass-Trrack's past year of commit activity
    JavaScript 1 1 0 0 Updated Aug 30, 2026
  • TrepoGen-nextstrain Public

    Nextstrain TrepoGen is a reproducible Nextstrain workflow for tracking bacterial diversity at both genome- and gene-level.

    Integrative-Transcriptomics/TrepoGen-nextstrain's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 25, 2026
  • PhageExpressionAtlas Public

    PhageExpressionAtlas is a web application for interactive exploration of phage infections on the transcriptional level based on dual RNA-seq data.

    Integrative-Transcriptomics/PhageExpressionAtlas's past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Aug 20, 2026
  • Shiny_DESeq2 Public
    Integrative-Transcriptomics/Shiny_DESeq2's past year of commit activity
    R 1 0 6 0 Updated Aug 5, 2026
  • trustpca Public
    Integrative-Transcriptomics/trustpca's past year of commit activity
    Python 3 GPL-3.0 2 1 0 Updated Aug 5, 2026
  • deconv-bench-v2 Public
    Integrative-Transcriptomics/deconv-bench-v2's past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 4, 2026
  • TSSpredator-Web Public

    TSSpredator-Web allows a web-based TSS predicition for prokaryotic data.

    Integrative-Transcriptomics/TSSpredator-Web's past year of commit activity
    JavaScript 1 GPL-3.0 0 0 0 Updated Jul 16, 2026
  • tss-captur-dsl2 Public Forked from Integrative-Transcriptomics/tss-captur

    TSS-characterization pipeline for transcribed but unclassified RNA-transcripts

    Integrative-Transcriptomics/tss-captur-dsl2's past year of commit activity
    HTML 2 GPL-3.0 2 0 0 Updated Jun 22, 2026
  • TrepoGen-auspice Public Forked from nextstrain/auspice

    Custom Auspice fork for visualizing global Treponema pallidum data with a focus on outer membrane proteins.

    Integrative-Transcriptomics/TrepoGen-auspice's past year of commit activity
    JavaScript 0 AGPL-3.0 175 0 0 Updated Jun 16, 2026
  • GO-Compass Public

    Visual Navigation of Multiple Lists of GO terms

    Integrative-Transcriptomics/GO-Compass's past year of commit activity
    JavaScript 4 1 7 19 Updated Jun 9, 2026
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…