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This two cheks if the sorting of the algorithms is Engine works perfectly or not.
These are working OK.
testTryToAddOnePresentAlgorithmMuchTimeToAnEngine and testTryToAddOneAlignAlgorithmMuchTimeToAnEngine
This two cheks wheter you can add one algorithm more then one time to the engine, or not. And you can do this, and its bad, because this algorithms take a lot of time to run.
testEngineGetOwlDiffMap
This one tests what happen, if we construct an engine, and then we want to get the difference between the two given ontology. Unfortunately we get a NullPointerException if we do not call Engine.phase1(). I think it would be better, if this (and maybe phase2() too) are called in the constructor. (And if they get a much speaker name, that would be very good.)
testEnginePhaseMethods
This one tests what happen if you call on an Engine phase2 before phase1. We get a NullPointerException. It could be logical not to call phase2 before phase1 becaouse of the names, altough it needs exception handling.