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Updated the 'align_self', 'flatten', and 'align_across' parameters to… #814

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Updated the 'align_self', 'flatten', and 'align_across' parameters to… #814

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6 changes: 3 additions & 3 deletions src/murfey/workflows/clem/register_align_and_merge_results.py
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Original file line number Diff line number Diff line change
Expand Up @@ -19,9 +19,9 @@
class AlignAndMergeResult(BaseModel):
series_name: str
image_stacks: list[Path]
align_self: Optional[str] = None
flatten: Optional[str] = "mean"
align_across: Optional[str] = None
align_self: bool = False
flatten: bool = True
align_across: bool = False
output_file: Path
thumbnail: Optional[Path] = None
thumbnail_size: Optional[tuple[int, int]] = None
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6 changes: 3 additions & 3 deletions tests/workflows/clem/test_register_align_and_merge_results.py
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Expand Up @@ -74,9 +74,9 @@ def test_run(
"result": {
"series_name": incoming_series_name,
"image_stacks": [],
"align_self": None,
"flatten": None,
"align_across": None,
"align_self": False,
"flatten": True,
"align_across": False,
"output_file": tmp_path / "dummy",
"thumbnail": None,
"thumbnail_size": None,
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