fix: force utf-8 encoding on all text file reads/writes - #278
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Several read_text()/open() calls relied on the platform's default encoding (locale-dependent), which breaks on ASCII-locale systems (e.g. bioconda's Linux test env, UnicodeDecodeError on texts.toml) and mis-encodes on non-UTF-8 Windows locales (e.g. French cp1252).
paretje
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Aug 5, 2026
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| # Write full configuration including defaults to file | ||
| with open(output_file_root + ".full-config.json", "w") as f: | ||
| with open(output_file_root + ".full-config.json", "w", encoding="utf-8") as f: |
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Would it make sense to do this for the other output files as well?
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Several read_text()/open() calls relied on the platform's default encoding (locale-dependent), which breaks on ASCII-locale systems (e.g. bioconda's Linux test env, UnicodeDecodeError on texts.toml) and mis-encodes on non-UTF-8 Windows locales (e.g. French cp1252).