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chore(deps): bump the python-dependencies group across 1 directory with 8 updates - #195

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Bumps the python-dependencies group with 8 updates in the / directory:

Package From To
fastapi 0.138.1 0.140.0
gitpython 3.1.54 3.1.57
websockets 16.0 16.1.1
sentence-transformers 5.6.0 5.6.1
pgvector 0.4.2 0.5.0
ruff 0.15.20 0.16.0
mypy 2.1.0 2.3.0
pre-commit 4.6.0 4.6.1

Updates fastapi from 0.138.1 to 0.140.0

Release notes

Sourced from fastapi's releases.

0.140.0

Refactors

Docs

Internal

0.139.2

Fixes

  • 🐛 Refactor router route building to make it thread-safe, mainly relevant for tests running in parallel threads (uncommon). PR #16013 by @​tiangolo.

0.139.1

Fixes

  • 🐛 Fix frontend fallback support for doted paths like /users/john.doe. PR #16011 by @​tiangolo.

Docs

  • 📝 Fix topic repository list not being displayed and skip_users not being applied. PR #15995 by @​YuriiMotov.

Translations

... (truncated)

Commits

Updates gitpython from 3.1.54 to 3.1.57

Release notes

Sourced from gitpython's releases.

3.1.57 - Security and Fixes

What's Changed

New Contributors

Full Changelog: gitpython-developers/GitPython@3.1.56...3.1.57

3.1.56 - SECURITY

What's Changed

Full Changelog: gitpython-developers/GitPython@3.1.55...3.1.56

3.1.55 - Security

What's Changed

Full Changelog: gitpython-developers/GitPython@3.1.54...3.1.55

Commits
  • ccbd573 prepare for new release
  • d1a631d Merge pull request #2193 from gitpython-developers/more-unsafe-options
  • ab33e33 Merge pull request #2194 from gitpython-developers/fix-basedpyright
  • 52199b3 address review comments
  • 60dec71 Adopt basedpyright with a legacy baseline
  • 7a4f5dc Block unsafe archive additions and bundle URI
  • 3af0c25 Block unsafe checkout-index and tag file options
  • fb5d584 Merge pull request #2187 from pick7/codex/remote-progress-return-type
  • 951cc44 Merge pull request #2188 from pick7/codex/redact-http-extraheader
  • 2e5b13f Merge pull request #2189 from pick7/codex/output-stream-timeout
  • Additional commits viewable in compare view

Updates websockets from 16.0 to 16.1.1

Release notes

Sourced from websockets's releases.

16.1.1

See https://websockets.readthedocs.io/en/stable/project/changelog.html for details.

16.1

See https://websockets.readthedocs.io/en/stable/project/changelog.html for details.

Commits
  • 01df1e4 Revert "Decode non-ASCII header values with iso-8859-1."
  • 2d61f74 Clarify restriction on headers in 16.1.
  • 4df6f90 Release version 16.1.
  • 7c69eca Increase timeout for building wheels.
  • 493864e Complete and review changelog.
  • 73ff538 Temporarily remove the trio implementation (again).
  • 77f7d71 Shorten changelog and docstring for previous commit.
  • 84859e1 Add text argument to broadcast() to force the frame type
  • 1a38f5a Document research on removing a workaround.
  • 99431ee Apply code style to docs/conf.py.
  • Additional commits viewable in compare view

Updates sentence-transformers from 5.6.0 to 5.6.1

Release notes

Sourced from sentence-transformers's releases.

v5.6.1 - Flash Attention Fix for XLM-R and RoBERTa Models

This patch release fixes silently degraded embeddings for RoBERTa-family models when flash attention is requested with transformers v5, notably every XLM-R based multilingual embedding model (BAAI/bge-m3, intfloat/multilingual-e5-large, etc.). The bug affected v5.5.0, v5.5.1, and v5.6.0.

Install this version with

# Training + Inference
pip install sentence-transformers[train]==5.6.1
Inference only, use one of:
pip install sentence-transformers==5.6.1
pip install sentence-transformers[onnx-gpu]==5.6.1
pip install sentence-transformers[onnx]==5.6.1
pip install sentence-transformers[openvino]==5.6.1
Multimodal dependencies (optional):
pip install sentence-transformers[image]==5.6.1
pip install sentence-transformers[audio]==5.6.1
pip install sentence-transformers[video]==5.6.1
Or combine as needed:
pip install sentence-transformers[train,onnx,image]==5.6.1

Fix position_ids offsetting for RoBERTa-family models when flattening inputs (#3879)

Since v5.5.0, the Transformer module flattens text-only batches into one packed sequence when flash attention is requested, skipping all padding overhead for a notable performance improvement. The position_ids of that packed sequence restart at 0 for every text, which is correct for the vast majority of models. RoBERTa-family architectures however compute positions as padding_idx + 1 + n for the n-th token, so every token read a position embedding shifted by padding_idx + 1 (usually 2). Nothing crashes, the embeddings are just silently worse.

from sentence_transformers import SentenceTransformer
An affected configuration: flash attention with an XLM-R based model
model = SentenceTransformer(
"BAAI/bge-m3",
model_kwargs={"attn_implementation": "flash_attention_2"},
)

Measured on BAAI/bge-m3:

Evaluation padded packed, 0-based positions packed, with this fix
stsb test Spearman 0.8485 0.7239 0.8485
NanoBEIR mean nDCG@10 0.6041 0.5414 0.6050

The quality loss recovers exactly once the offset is applied. The fix scans the loaded model's modules once for an int padding_idx stored next to a learned position_embeddings table, and offsets the packed position_ids when that pair is found. An audit of transformers finds 16 architectures with that pair (roberta, xlm_roberta, xlm_roberta_xl, camembert, roberta_prelayernorm, xmod, data2vec_text, longformer, luke, ibert, mpnet, markuplm, lilt, layoutlmv3, esm, and pp_doclayout_v2), all offset by exactly padding_idx + 1, and no 0-based or rotary architecture matches.

You are only affected if you encoded text with flash attention requested on transformers v5 with a RoBERTa-family checkpoint. The default padded path (e.g. sdpa) was never affected, and neither were MPNet models like all-mpnet-base-v2 despite mpnet appearing in the audit: transformers does not support flash attention for MPNet at all. If you did index a corpus with such a configuration, re-encode it after upgrading: pre-fix embeddings score notably worse and do not mix with post-fix embeddings.

What's Changed

... (truncated)

Commits
  • 7d3eb16 Release v5.6.1
  • 286dcf3 [tests] Skip bf16 + Windows + CPU forwards, as they can WindowsError on tor...
  • 30bad93 [ci] Exclude librosa/numba/llvmlite on Python 3.13 (#3835)
  • 9ca6bbc 🚨 Fix position_ids offsetting for RoBERTa-family models when flattening input...
  • See full diff in compare view

Updates pgvector from 0.4.2 to 0.5.0

Changelog

Sourced from pgvector's changelog.

0.5.0 (2026-07-06)

  • Added experimental support for type hints
  • Changed vector and halfvec types to return list for Django, SQLAlchemy, SQLModel, and Peewee
  • Changed vector type to return Vector object for Psycopg 3, Psycopg 2, asyncpg, and pg8000
  • Removed utils package (use top-level pgvector package instead)
  • Removed re-exported classes (use top-level pgvector package instead)
  • Removed dependency on NumPy
  • Dropped support for Python < 3.10
  • Dropped support for SQLAlchemy < 2
Commits

Updates ruff from 0.15.20 to 0.16.0

Release notes

Sourced from ruff's releases.

0.16.0

Release Notes

Released on 2026-07-23.

Check out the blog post for a migration guide and overview of the changes!

Breaking changes

  • Ruff now enables a much larger set of rules by default (413, up from 59). See the blog post for more details and the new Default Rules page for a full listing of the enabled rules.

  • Ruff can now format Python code blocks in Markdown files and will do this by default. See the documentation for more details.

  • Ruff now supports ruff: ignore comments at the ends of lines, like noqa comments, or on the line preceding a diagnostic. For example, these both suppress an unused-import (F401) diagnostic:

    import math  # ruff: ignore[F401]
ruff: ignore[F401]
import os

  • Fixes are now shown in check and format --check output:

    ❯ ruff format --check .
unformatted: File would be reformatted
 --> try.md:1:1
  |
1 | ```python
  - import   math
2 + import math
3 | ```
  |
1 file would be reformatted

    This example also shows off the Markdown formatting.

  • format --check now supports the same output formats as the linter, including the github and gitlab outputs for rendering annotations in CI:

    ❯ ruff format --check --output-format github .
::error title=ruff (unformatted),file=try.md,line=2,col=8,endLine=2,endColumn=10::try.md:2:8: unformatted: File would be reformatted

    See the CLI help or documentation for the full list of supported formats.

  • The filename, location, end_location, fix.edits[].location, and fix.edits[].end_location fields in the JSON output format may now be null rather than defaulting to the empty string and row 1, column 1, respectively.

... (truncated)

Changelog

Sourced from ruff's changelog.

0.16.0

Released on 2026-07-23.

Check out the blog post for a migration guide and overview of the changes!

Breaking changes

  • Ruff now enables a much larger set of rules by default (413, up from 59). See the blog post for more details and the new Default Rules page for a full listing of the enabled rules.

  • Ruff can now format Python code blocks in Markdown files and will do this by default. See the documentation for more details.

  • Ruff now supports ruff: ignore comments at the ends of lines, like noqa comments, or on the line preceding a diagnostic. For example, these both suppress an unused-import (F401) diagnostic:

    import math  # ruff: ignore[F401]
ruff: ignore[F401]
import os

  • Fixes are now shown in check and format --check output:

    ❯ ruff format --check .
unformatted: File would be reformatted
 --> try.md:1:1
  |
1 | ```python
  - import   math
2 + import math
3 | ```
  |
1 file would be reformatted

    This example also shows off the Markdown formatting.

  • format --check now supports the same output formats as the linter, including the github and gitlab outputs for rendering annotations in CI:

    ❯ ruff format --check --output-format github .
::error title=ruff (unformatted),file=try.md,line=2,col=8,endLine=2,endColumn=10::try.md:2:8: unformatted: File would be reformatted

... (truncated)

Commits
  • a2635fd Bump 0.16.0 (#27136)
  • 3433449 [ty] Reuse full call diagnostics for implicit setter calls (#27115)
  • 2240070 Reflect ruff: ignore and --add-ignore stabilization in documentation (#27...
  • 17ef711 Stabilize --add-ignore (#27125)
  • ef912bb Add newly stabilized rules to defaults (#27055)
  • b30f040 Stabilize new default rules (#27035)
  • bcd70c5 Exclude Markdown files from format-dev runs (#27052)
  • 87e51e2 Fix format --check spans for syntax errors (#27045)
  • afe2723 [flake8-gettext] Stabilize qualified-name and built-in binding resolution (...
  • a9702d8 [flake8-bandit] Stabilize string literal binding resolution (S310) (#26944)
  • Additional commits viewable in compare view

Updates mypy from 2.1.0 to 2.3.0

Changelog

Sourced from mypy's changelog.

Mypy Release Notes

Next Release

Packaging changes

Mypy 2.3

We've just uploaded mypy 2.3.0 to the Python Package Index (PyPI). Mypy is a static type checker for Python. This release includes new features, performance improvements and bug fixes. You can install it as follows:

python3 -m pip install -U mypy

You can read the full documentation for this release on Read the Docs.

The Upcoming Switch to the New Native Parser

We are planning to enable the new native parser (--native-parser) by default soon. We recommend that you test the native parser in your projects and report any issues in the mypy issue tracker.

Mypyc Free-threading Memory Safety

Free-threaded Python builds that don't have the GIL require additional synchronization primitives or lock-free algorithms to ensure memory safety when there are race conditions (for example, when a thread reads a list item while another thread writes the same list item concurrently). This release greatly improves memory safety of free threading.

List operations are now memory-safe on free threaded Python builds, even in the presence of race conditions. This has some performance cost. For list-heavy workloads, using librt.vecs.vec instead of list is often significantly faster, but note that vec is not (and likely won't be) fully memory safe, and the user is expected to avoid race conditions. The newly introduced librt.threading.Lock helps with this. Using variable-length tuples can also be more efficient than lists, since tuples are immutable and don't require expensive synchronization to ensure memory safety.

Instance attribute access is also (mostly) memory safe now on free-threaded builds in the presence of race conditions. We are planning to fix the remaining unsafe cases in a future release.

Full list of changes:

  • Make attribute access memory safe on free-threaded builds (Jukka Lehtosalo, PR 21705)
  • Fix unsafe borrowing of instance attributes with free-threading (Jukka Lehtosalo, PR 21688)
  • Make list get/set item more memory safe on free-threaded builds (Jukka Lehtosalo, PR 21683)
  • Don't borrow list items on free-threaded builds (Jukka Lehtosalo, PR 21679)
  • Make multiple assignment from list memory-safe on free-threaded builds (Jukka Lehtosalo, PR 21684)

... (truncated)

Commits
  • 8aabf84 Drop +dev from version
  • 4d8ad2a Update changelog for 2.3 release (#21728)
  • 2c21546 [mypyc] Update documentation of race conditions under free threading (#21726)
  • a9f62a3 [mypyc] Make attribute access memory safe on free-threaded builds (#21705)
  • 0faa413 Use PYODIDE environment variable for Emscripten cross-compilation detection...
  • 3d75cdb [mypyc] Borrow final attributes more aggressively (#21702)
  • 24c237d [mypyc] Improve documentation of Final (#21713)
  • b5be217 [mypyc] Update free threading Python compatibility docs (#21711)
  • cbcb51a Narrow for frozendict membership check (#21709)
  • af2bc0f Sync typeshed (#21707)
  • Additional commits viewable in compare view

Updates pre-commit from 4.6.0 to 4.6.1

Release notes

Sourced from pre-commit's releases.

pre-commit v4.6.1

Fixes

Changelog

Sourced from pre-commit's changelog.

4.6.1 - 2026-07-21

Fixes

Commits
  • 242ce8a v4.6.1
  • 766e550 Merge pull request #3727 from pre-commit/dedupe
  • 1558d06 Merge pull request #3726 from pre-commit/exists-faster
  • 8a1c47a avoid duplicate files in --all-files during conflict
  • 2e01c99 faster check of rev existing locally as a commit
  • 3613bf2 Merge pull request #3701 from pre-commit/autoupdate-repos
  • 1d811d9 Return an error for invalid --repo
  • 374d354 Merge pull request #3711 from damonbayer/dmb_JULIA_DEPOT_PATH
  • 1e7994f set JULIA_DEPOT_PATH
  • b2b9119 Merge pull request #3719 from pre-commit/npm-unknown-options
  • Additional commits viewable in compare view

@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Jul 25, 2026
@github-actions
github-actions Bot enabled auto-merge (rebase) July 25, 2026 03:18
@dependabot
dependabot Bot force-pushed the dependabot/uv/python-dependencies-4a026cf91c branch from a6de1ee to 55f0a83 Compare July 26, 2026 10:55
@dependabot
dependabot Bot force-pushed the dependabot/uv/python-dependencies-4a026cf91c branch from 55f0a83 to 0482823 Compare July 26, 2026 11:01
@dependabot
chore(deps): bump the python-dependencies group across 1 directory wi…
5a835b2 
…th 8 updates

Bumps the python-dependencies group with 8 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [fastapi](https://github.com/fastapi/fastapi) | `0.138.1` | `0.140.0` |
| [gitpython](https://github.com/gitpython-developers/GitPython) | `3.1.54` | `3.1.57` |
| [websockets](https://github.com/python-websockets/websockets) | `16.0` | `16.1.1` |
| [sentence-transformers](https://github.com/huggingface/sentence-transformers) | `5.6.0` | `5.6.1` |
| [pgvector](https://github.com/pgvector/pgvector-python) | `0.4.2` | `0.5.0` |
| [ruff](https://github.com/astral-sh/ruff) | `0.15.20` | `0.16.0` |
| [mypy](https://github.com/python/mypy) | `2.1.0` | `2.3.0` |
| [pre-commit](https://github.com/pre-commit/pre-commit) | `4.6.0` | `4.6.1` |



Updates `fastapi` from 0.138.1 to 0.140.0
- [Release notes](https://github.com/fastapi/fastapi/releases)
- [Commits](fastapi/fastapi@0.138.1...0.140.0)

Updates `gitpython` from 3.1.54 to 3.1.57
- [Release notes](https://github.com/gitpython-developers/GitPython/releases)
- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES)
- [Commits](gitpython-developers/GitPython@3.1.54...3.1.57)

Updates `websockets` from 16.0 to 16.1.1
- [Release notes](https://github.com/python-websockets/websockets/releases)
- [Commits](python-websockets/websockets@16.0...16.1.1)

Updates `sentence-transformers` from 5.6.0 to 5.6.1
- [Release notes](https://github.com/huggingface/sentence-transformers/releases)
- [Commits](huggingface/sentence-transformers@v5.6.0...v5.6.1)

Updates `pgvector` from 0.4.2 to 0.5.0
- [Changelog](https://github.com/pgvector/pgvector-python/blob/master/CHANGELOG.md)
- [Commits](pgvector/pgvector-python@v0.4.2...v0.5.0)

Updates `ruff` from 0.15.20 to 0.16.0
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.15.20...0.16.0)

Updates `mypy` from 2.1.0 to 2.3.0
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](python/mypy@v2.1.0...v2.3.0)

Updates `pre-commit` from 4.6.0 to 4.6.1
- [Release notes](https://github.com/pre-commit/pre-commit/releases)
- [Changelog](https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md)
- [Commits](pre-commit/pre-commit@v4.6.0...v4.6.1)

---
updated-dependencies:
- dependency-name: fastapi
  dependency-version: 0.140.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-dependencies
- dependency-name: gitpython
  dependency-version: 3.1.55
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: mypy
  dependency-version: 2.3.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-dependencies
- dependency-name: pgvector
  dependency-version: 0.5.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-dependencies
- dependency-name: pre-commit
  dependency-version: 4.6.1
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: ruff
  dependency-version: 0.16.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-dependencies
- dependency-name: sentence-transformers
  dependency-version: 5.6.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: websockets
  dependency-version: 16.1.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-dependencies
...

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@dependabot
dependabot Bot force-pushed the dependabot/uv/python-dependencies-4a026cf91c branch from 0482823 to 5a835b2 Compare July 26, 2026 11:06
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