Releases: CCPBioSim/CodeEntropy
Releases · CCPBioSim/CodeEntropy
v2.3.0
What's Changed
- Store grouped-only regression baselines and run slow cases in update workflow by @harryswift01 in #346
- Refactor trajectory handling to explicit frame-index execution by @harryswift01 in #344
- Run Coveralls coverage on pull requests and main branch updates by @harryswift01 in #356
- Update macOS runner to macos-26 by @harryswift01 in #353
- Correct lysozyme config filename in User Guide to match filestore by @harryswift01 in #349
- Update Windows runner to VS2026 image by @harryswift01 in #351
- Add configurable Dask frame execution with SLURM-backed HPC support by @harryswift01 in #354
- Introduce Deterministic Frame Map-Reduce Execution for Scalable LevelDAG Processing by @harryswift01 in #359
- Introduce Dedicated ConformationDAG Stage for Conformational Analysis by @harryswift01 in #366
- Split Conformational Analysis into Explicit Serial Phases by @harryswift01 in #367
- fix(deps): update dependency matplotlib to >=3.11,<3.12 by @renovate[bot] in #360
- Add serial chunked conformational map-reduce workflow by @harryswift01 in #369
- Cache customised united-atom axes topology for frame covariance by @harryswift01 in #373
- Avoid memory-universe copies during conformational topology discovery by @harryswift01 in #371
- Cache customised residue axes topology for frame covariance by @harryswift01 in #375
- Tidy level package structure by @harryswift01 in #377
- Fix blocked Coveralls upload by splitting main coverage workflow by @harryswift01 in #378
- Update to version 2.3.0 by @github-actions[bot] in #379
Full Changelog: 2.2.4...2.3.0
v2.2.4
What's Changed
- Update dependency rich to v15 by @renovate[bot] in #336
- Fix Conda build failure due to missing conda-build in GitHub Actions environment by @harryswift01 in #342
- Update to version 2.2.4 by @github-actions[bot] in #343
Full Changelog: 2.2.3...2.2.4
v2.2.3
What's Changed
- Disable GitHub Actions Caching Across CI Workflows by @harryswift01 in #337
- Fix indexing issue for multiple dihedrals by @skfegan in #339
- Update to version 2.2.3 by @github-actions[bot] in #340
Full Changelog: 2.2.2...2.2.3
v2.2.2
What's Changed
- Fixing skipped transvibrational entropy. by @skfegan in #328
- Update to version 2.2.2 by @github-actions[bot] in #329
Full Changelog: 2.2.1...2.2.2
v2.2.1
What's Changed
- Fix unsatisfiable numba version constraint and align conda recipe metadata by @harryswift01 in #325
- Update to version 2.2.1 by @github-actions[bot] in #326
Full Changelog: 2.2.0...2.2.1
v2.2.0
What's Changed
- Enforce deterministic group ordering across entropy pipeline and fix ethyl-acetate regression test topology mismatch by @harryswift01 in #311
- Optimize RAD neighbor search and blocking loop in CodeEntropy pipeline by @harryswift01 in #312
- Trajectory Slicing by @skfegan in #316
- Fixing #317 Invalid Eigenvalues by @skfegan in #318
- Add CI workflow for updating regression test baselines by @harryswift01 in #321
- Lammps compatibility by @jkalayan in #322
- Update to version 2.2.0 by @github-actions[bot] in #323
Full Changelog: 2.1.1...2.2.0
v2.1.1
What's Changed
- Introduce scenario-based regression testing framework with expanded configuration coverage by @harryswift01 in #305
- Update to version 2.1.1 by @github-actions[bot] in #308
Full Changelog: 2.1.0...2.1.1
v2.1.0
What's Changed
- Add Conda packaging and automated Anaconda release workflow by @harryswift01 in #293
- Fix logo contrast in light/dark modes by @harryswift01 in #299
- Guard interfacial water entropy for solute-free systems and fix WaterEntropy reporter usage by @harryswift01 in #297
- Introduce Basic Orientational Entropy Calculations by @skfegan in #294
- Force Halving for Flexible Dihedrals by @skfegan in #300
- fix(deps): update dependency waterentropy to >=2,<2.2 by @renovate[bot] in #301
- fix(deps): update dependency waterentropy to >=2,<2.3 by @renovate[bot] in #302
- Update to version 2.1.0 by @github-actions[bot] in #303
Full Changelog: 2.0.0...2.1.0
v2.0.0
What's Changed
- fix(deps): update dependency sphinx-rtd-theme to >=3,<3.2 by @renovate[bot] in #245
- fix(deps): update dependency sphinx to v9 by @renovate[bot] in #232
- Update issue templates by @harryswift01 in #247
- Adopt Principal Axes for Translational and Rotational Coordinates at All Levels by @skfegan in #246
- Enable Issue Template Picker by Adding Templates and Adding Configuration File by @harryswift01 in #249
- Introduce Table for GitHub Badges by @harryswift01 in #252
- Add Parallel Build for Coveralls in CI by @harryswift01 in #255
- Update GitHub Issues to Include HTML Friendly Comments by @harryswift01 in #253
- Isolate CI Testing Strategies for
pre-commit,docsandtestingby @harryswift01 in #257 - Bump peter-evans/create-pull-request from 8.0.0 to 8.1.0 by @dependabot[bot] in #258
- Update dependency pandas to v3 by @renovate[bot] in #260
- Bump actions/setup-python from 6.1.0 to 6.2.0 by @dependabot[bot] in #259
- Remove dependabot from repository workflow by @harryswift01 in #262
- Include Zenodo DOI within
README.mdby @harryswift01 in #264 - Update DOI badge link in
README.mdby @harryswift01 in #266 - Update CI matrix and documentation for supported Python versions by @harryswift01 in #269
- Align CodeEntropy with entropy methods used in 2019 paper by @jkalayan in #267
- Improve Getting Started documentation clarity and workflow by @harryswift01 in #271
- Use MDAnalysis
principal_axes()for single-UA molecules to prevent complex axes by @jkalayan in #274 - Refactor workflow to DAG architecture with expanded testing, CI modernisation, and validated numerical equivalence by @harryswift01 in #281
- Regenerate API documentation and standardise Google-style docstrings by @harryswift01 in #283
- Update Logo File Path Location by @harryswift01 in #286
- Add automated Conda publishing to release workflow by @harryswift01 in #287
- Update to version 1.1.0 by @github-actions[bot] in #288
- Fix Conda recipe version update in release workflow by @harryswift01 in #290
- Update to version 2.0.0 by @github-actions[bot] in #291
Full Changelog: 1.0.7...2.0.0
v1.0.7
What's Changed
- chore(deps): update dependency pylint to v4.0.4 by @renovate[bot] in #223
- chore(deps): update softprops/action-gh-release action to v2.5.0 by @renovate[bot] in #224
- Update Renovate to include PEP 621 support and replace-based dependency ranges by @harryswift01 in #227
- Update dependency specification to version ranges for Renovate compatibility by @harryswift01 in #230
- fix(deps): update dependency sphinx-rtd-theme to v3 by @renovate[bot] in #233
- Remove
lockFileMaintenanceconfiguration fromrenovate.jsonby @harryswift01 in #237 - Bump actions/checkout from 6.0.0 to 6.0.1 by @dependabot[bot] in #234
- Bump peter-evans/create-pull-request from 7.0.9 to 7.0.11 by @dependabot[bot] in #238
- Bump peter-evans/create-pull-request from 7.0.11 to 8.0.0 by @dependabot[bot] in #239
- Automate yearly copyright update in license file by @harryswift01 in #241
- Update license copyright year(s) by @github-actions[bot] in #242
- fix(deps): update dependency waterentropy to v2 by @renovate[bot] in #243
- Update to version 1.0.7 by @github-actions[bot] in #244
Full Changelog: 1.0.6...1.0.7