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deps(quantum-ml): bump the quantum-ml-deps group across 1 directory with 8 updates - #1129

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Updates the requirements on qiskit, pandas, matplotlib, mcp, anyio, gevent, prometheus-client and mypy to permit the latest version.
Updates qiskit from 2.5.0 to 2.5.1

Release notes

Sourced from qiskit's releases.

Qiskit 2.5.1

Changelog

Fixed

  • Fix serial_layers global phase copying (#16362) (#16647)
  • Fix transpiler error message with routing_pass when layout_trials or swap_trials is set (#16637) (#16644)
  • Fix deadlock in Optimize1qGatesDecomposition (#16592) (#16645)
  • Clarify error message about gate missing from WrapAngleRegistry (#16633) (#16635)
  • Fix sx resynthesis of negative angles in CommutativeCancellation (#16599) (#16615)
  • Fix tautological boolean oracle synthesis (#16530) (#16543)
Commits

Updates pandas to 3.0.5

Release notes

Sourced from pandas's releases.

pandas 3.0.5

We are pleased to announce the release of pandas 3.0.5. This is a patch release in the 3.0.x series and includes some regression fixes and bug fixes. We recommend that all users of the 3.0.x series upgrade to this version.

See the full whatsnew for a list of all the changes.

Pandas 3.0 supports Python 3.11 and higher. The release can be installed from PyPI:

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Commits

Updates matplotlib to 3.11.1

Release notes

Sourced from matplotlib's releases.

REL: v3.11.1

This is the first bugfix release of the 3.11.x series.

This release contains several bug-fixes and adjustments:

  • Fix tight layout of multiple subplots with sharey=True
  • Fix NoNorm cursor formatting for uint8 images
  • Fix occasional misalignment in reported mouse position (also fix a bug with canvas height)
  • Fix clipped Axis labels on 3D plots with tight layout
  • Fix inverted Axis on 3D plots
  • Fix restoring 'auto' aspect in 3D axes after switching from 'equal'
  • Fix missing glyphs when subsetting Type 1 fonts in PDF
  • Fix oversized embedding of Type 42 fonts in PDF/PostScript files

As well as several documentation and typing improvements and corrections.

Commits
  • 3c1757a REL: v3.11.1
  • 792c6b5 DOC: Prepare for 3.11.1
  • aaff9f6 Merge branch 'v3.11.0-doc' into v3.11.x
  • d4f4527 Merge pull request #32052 from meeseeksmachine/auto-backport-of-pr-32038-on-v...
  • 6ad4bcf Merge pull request #32050 from meeseeksmachine/auto-backport-of-pr-31304-on-v...
  • 7fb74d3 Merge pull request #32051 from meeseeksmachine/auto-backport-of-pr-32037-on-v...
  • c624aec Backport PR #32038: Fix occasional misalignment in reported mouse position (a...
  • 8eda2b7 Backport PR #32037: Bump the actions group with 3 updates
  • a0e7ae5 Backport PR #31304: Fix restoring 'auto' aspect in 3D axes after switching fr...
  • 9001323 Merge pull request #32047 from meeseeksmachine/auto-backport-of-pr-32025-on-v...
  • Additional commits viewable in compare view

Updates mcp to 2.0.0

Release notes

Sourced from mcp's releases.

v2.0.0

MCP Python SDK v2 Stable Release

This is v2.0.0, the stable v2 release of the MCP Python SDK. It supports the 2026-07-28 revision of the Model Context Protocol and serves every earlier revision from the same server. pip install mcp now installs 2.x.

pip install "mcp[cli]"
# or
uv add "mcp[cli]"

Documentation Rewrite

The documentation has the full tutorial and API reference. Coming from v1? What's new in v2 is the tour of what changed and why, and the migration guide lists every breaking change with before-and-after code.

V1 Maintenance mode

v1.x is in maintenance mode and will only receive security fixes from now on The 1.x line lives on the v1.x branch, continues to receive critical bug fixes and security patches, and is documented at https://py.sdk.modelcontextprotocol.io/v1/. If your project is not ready to migrate, keep a <2 upper bound on your requirement (for example mcp>=1.28,<2).

Highlights

One SDK, both protocol eras

v2 speaks the 2026-07-28 revision (stateless requests with no handshake, server/discover, subscriptions/listen, multi-round-trip requests) and still serves every 2025-era client from the same MCPServer, over Streamable HTTP and stdio, with nothing to configure. Client(target) negotiates the version automatically.

FastMCP is now MCPServer, and there is a first-class Client

The decorator API is unchanged; the low-level Server is rebuilt around a shared dispatcher engine, and one Client object replaces v1's transport-plus-ClientSession-plus-initialize() layering. It connects to a URL, a stdio subprocess, a custom transport, or straight to a server object in memory for tests.

Multi-round-trip requests and resolver dependency injection

At 2026-07-28 the server can no longer call the client, so tools return the question instead. A Resolve(fn) parameter is filled by your function invisibly to the model and can put a question to the user; one tool body serves both eras.

Extension APIs, OpenTelemetry, and a standalone types package

Servers and clients compose protocol extensions through pluggable extension APIs (MCP Apps built in); OpenTelemetry tracing ships on by default; every protocol type is its own package, mcp-types (imported as mcp_types), published in lock-step with mcp.

Hardened stdio and auth

stdio servers keep handler subprocesses and stray prints off the wire, and stdout is diverted to stderr while serving. OAuth adds RFC 9207 issuer validation, the SEP-990 identity-assertion flow, and the client-credentials extension.

Coming from a v2 pre-release

Since the last release candidate: the per-version wire packages are private (mcp_types._v*), mcp.types is a permanent alias for mcp_types, the auth registration request model is split from the registered-client record, cancelled requests are no longer answered, and log notifications are gated on the per-request log-level opt-in at 2026-07-28. Since the betas: Client(cache=False) is now cache=None with CacheConfig() the default; Context.client_id, RFC7523OAuthClientProvider, and OAuthClientProvider(timeout=) are removed; the client-credentials providers take scope=; message_handler receives notifications and exceptions only; FileResource(is_binary=) becomes encoding; MCP_* env vars are gone with pydantic-settings; Streamable HTTP servers reject bodies over 4 MiB with HTTP 413. The migration guide covers all of it.

Known gaps

The tasks extension (SEP-2663) is not part of this release. On the client, the DPoP proof binding (SEP-1932) and the workload-identity jwt-bearer grant are not implemented; both are additive and can land in 2.x.

Feedback

... (truncated)

Commits
  • 6f69a37 Present v2 as the stable release across the README, docs, and policies (#3178)
  • 78e6fbb Serve v2 docs at the site root, with permanent per-major paths (#3176)
  • af06330 Remove unused StreamableHTTPTransport.get_session_id() (#3205)
  • 68ca87e Document the two-line release process for stable v2 (#3179)
  • c9c431b Expose the middleware chain on MCPServer and stop sending unrequested change ...
  • 528e366 Fail fast on server-to-client requests in JSON-response mode instead of hangi...
  • 27f5cc7 Remove unused mcpserver.exceptions.ValidationError (#3199)
  • 89c5e70 Gate log notifications on the per-request log-level opt-in at 2026-07-28 (#3198)
  • b61ce38 docs: fix off-by-one hl_lines in apps.md (#3196)
  • b7c9a91 Add mcp.types as a permanent alias for mcp_types (#3190)
  • Additional commits viewable in compare view

Updates anyio to 4.14.2

Release notes

Sourced from anyio's releases.

4.14.2

  • Changed ByteReceiveStream.receive() implementations to raise a ValueError when max_bytes is not a positive integer (#1191)
  • Fixed CapacityLimiter.total_tokens rejecting float("inf") when the limiter was instantiated outside of an event loop. The adapter setter checked for infinity by identity (value is math.inf), so only the exact math.inf singleton was accepted, while every backend setter (using math.isinf()) accepts any positive infinity (#1189; PR by @​greymoth-jp).
  • Fixed to_process.run_sync() deadlocking when the worker function writes enough data to sys.stderr to fill the (undrained) pipe buffer. The worker process now redirects sys.stderr to os.devnull as well, matching the documented behavior
  • Fixed TLSStream.wrap() matching an internationalized (unicode) host name against the peer certificate using IDNA 2003 (via the standard library) instead of IDNA 2008, which could cause the host name to be matched against the wrong certificate (#1208)
  • Fixed anyio.open_process() (and run_process()) ignoring the extra_groups argument, as it mistakenly passed the value of the group argument instead (#1209)
  • Fixed CapacityLimiter.acquire_nowait() and CapacityLimiter.acquire_nowait_on_behalf_of() raising trio.WouldBlock instead of anyio.WouldBlock on the trio backend when there are no tokens available (#1218)
  • Fixed CapacityLimiter on the asyncio backend over-granting tokens (borrowed_tokens exceeding total_tokens and available_tokens going negative) when a non-blocking acquire was made in the window between a token being released and the notified waiter resuming. The freed token is now reserved for the woken waiter right away, so the non-blocking acquire correctly raises WouldBlock (#1170; PR by @​gaoflow)
  • Fixed unnecessary CPU spin when delivering cancellation from CancelScope on asyncio under certain conditions, including improper cancel scope nesting (#1111)
Commits
  • c384f99 Bumped up the version
  • dbba29d Fixed 100% CPU spin on cancel scope misuse (#1217)
  • 6bbc6c3 Fix CapacityLimiter over-granting tokens on asyncio (#1172)
  • 6f82b25 Refactored TestTLSStream.test_receive_invalid_max_bytes() to be less flaky
  • be24b04 Relaxed timeouts to fix test flakiness
  • 8113506 Fix test flakiness caused by slow callback duration logging
  • 1e988b6 Fixed CapacityLimiter raising trio.WouldBlock instead of anyio.WouldBlock (#1...
  • 44713f3 Pin setup-uv to a commit sha across downstream jobs (#1213)
  • f1b7301 Fixed stderr writes in a worker subprocess causing a deadlock (#1207)
  • 212be93 Fix flaky test_tcp_listener_same_port using a hardcoded port (#1206)
  • Additional commits viewable in compare view

Updates gevent from 26.5.0 to 26.7.0

Commits
  • 1ae8449 Preparing release 26.7.0
  • af4fad4 Add note about change in binary wheel building.
  • 894a6e1 gevent/resolver/_addresses.py: Apply suggestion from @​koteshyelamati and move...
  • 4bbfae8 Merge pull request #2190 from gevent/os-close-no-init-hub
  • fbc0ca7 Blanket skip two SSL tests that are highly environment sensitive.
  • bef4cdd Disable 3.15 on windows entirely for now; everything is crashing and I'm pret...
  • 95c5b1e Attempt some CFFI-related workarounds.
  • 2b754a5 cython won't build on windows, must stick to precompiled version. Debugging a...
  • ebcebb0 Track down why 3.15 was initting the hub.
  • dcf4eae Merge pull request #2189 from ddorian/fix-shutdown-atexit-order
  • Additional commits viewable in compare view

Updates prometheus-client from 0.25.0 to 0.26.0

Release notes

Sourced from prometheus-client's releases.

v0.26.0

What's Changed

New Contributors

Full Changelog: prometheus/client_python@v0.25.0...v0.26.0

Commits
  • 9b6b971 Release v0.26.0
  • fb072c2 Fix operator precedence allowing exemplars on any metric type (#1188)
  • 6e22fb5 Remove nameless collectors from the registry on unregister (#1191)
  • 5b09479 Parse the native histogram sum as a float (#1192)
  • 769b415 fix: make test suite pass on Windows and Python 3.12+ (#1185)
  • d0b497f Update common Prometheus files (#1195)
  • 75603d7 Update common Prometheus files (#1194)
  • fb2351f Do not emit a leading zero in floatToGoString exponents >= 10 (#1190)
  • a39a697 Validate Enum arguments before registering the collector (#1189)
  • a96f6f4 Add TLS version parameters for start_wsgi_server (#1178)
  • Additional commits viewable in compare view

Updates mypy from 2.2.0 to 2.3.0

Changelog

Sourced from mypy's changelog.

Mypy Release Notes

Next Release

Packaging changes

Mypy 2.3

We've just uploaded mypy 2.3.0 to the Python Package Index (PyPI). Mypy is a static type checker for Python. This release includes new features, performance improvements and bug fixes. You can install it as follows:

python3 -m pip install -U mypy

You can read the full documentation for this release on Read the Docs.

The Upcoming Switch to the New Native Parser

We are planning to enable the new native parser (--native-parser) by default soon. We recommend that you test the native parser in your projects and report any issues in the mypy issue tracker.

Mypyc Free-threading Memory Safety

Free-threaded Python builds that don't have the GIL require additional synchronization primitives or lock-free algorithms to ensure memory safety when there are race conditions (for example, when a thread reads a list item while another thread writes the same list item concurrently). This release greatly improves memory safety of free threading.

List operations are now memory-safe on free threaded Python builds, even in the presence of race conditions. This has some performance cost. For list-heavy workloads, using librt.vecs.vec instead of list is often significantly faster, but note that vec is not (and likely won't be) fully memory safe, and the user is expected to avoid race conditions. The newly introduced librt.threading.Lock helps with this. Using variable-length tuples can also be more efficient than lists, since tuples are immutable and don't require expensive synchronization to ensure memory safety.

Instance attribute access is also (mostly) memory safe now on free-threaded builds in the presence of race conditions. We are planning to fix the remaining unsafe cases in a future release.

Full list of changes:

  • Make attribute access memory safe on free-threaded builds (Jukka Lehtosalo, PR 21705)
  • Fix unsafe borrowing of instance attributes with free-threading (Jukka Lehtosalo, PR 21688)
  • Make list get/set item more memory safe on free-threaded builds (Jukka Lehtosalo, PR 21683)
  • Don't borrow list items on free-threaded builds (Jukka Lehtosalo, PR 21679)
  • Make multiple assignment from list memory-safe on free-threaded builds (Jukka Lehtosalo, PR 21684)

... (truncated)

Commits
  • 8aabf84 Drop +dev from version
  • 4d8ad2a Update changelog for 2.3 release (#21728)
  • 2c21546 [mypyc] Update documentation of race conditions under free threading (#21726)
  • a9f62a3 [mypyc] Make attribute access memory safe on free-threaded builds (#21705)
  • 0faa413 Use PYODIDE environment variable for Emscripten cross-compilation detection...
  • 3d75cdb [mypyc] Borrow final attributes more aggressively (#21702)
  • 24c237d [mypyc] Improve documentation of Final (#21713)
  • b5be217 [mypyc] Update free threading Python compatibility docs (#21711)
  • cbcb51a Narrow for frozendict membership check (#21709)
  • af2bc0f Sync typeshed (#21707)
  • Additional commits viewable in compare view

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@dependabot
deps(quantum-ml): bump the quantum-ml-deps group across 1 directory w…
c8f11c7 
…ith 8 updates

Updates the requirements on [qiskit](https://github.com/Qiskit/qiskit), [pandas](https://github.com/pandas-dev/pandas), [matplotlib](https://github.com/matplotlib/matplotlib), [mcp](https://github.com/modelcontextprotocol/python-sdk), [anyio](https://github.com/agronholm/anyio), [gevent](https://github.com/gevent/gevent), [prometheus-client](https://github.com/prometheus/client_python) and [mypy](https://github.com/python/mypy) to permit the latest version.

Updates `qiskit` from 2.5.0 to 2.5.1
- [Release notes](https://github.com/Qiskit/qiskit/releases)
- [Changelog](https://github.com/Qiskit/qiskit/blob/main/docs/release_notes.rst)
- [Commits](Qiskit/qiskit@2.5.0...2.5.1)

Updates `pandas` to 3.0.5
- [Release notes](https://github.com/pandas-dev/pandas/releases)
- [Commits](pandas-dev/pandas@v3.0.4...v3.0.5)

Updates `matplotlib` to 3.11.1
- [Release notes](https://github.com/matplotlib/matplotlib/releases)
- [Commits](matplotlib/matplotlib@v3.11.0...v3.11.1)

Updates `mcp` to 2.0.0
- [Release notes](https://github.com/modelcontextprotocol/python-sdk/releases)
- [Changelog](https://github.com/modelcontextprotocol/python-sdk/blob/main/RELEASE.md)
- [Commits](modelcontextprotocol/python-sdk@v1.28.1...v2.0.0)

Updates `anyio` to 4.14.2
- [Release notes](https://github.com/agronholm/anyio/releases)
- [Commits](agronholm/anyio@4.14.1...4.14.2)

Updates `gevent` from 26.5.0 to 26.7.0
- [Release notes](https://github.com/gevent/gevent/releases)
- [Changelog](https://github.com/gevent/gevent/blob/master/docs/changelog_pre.rst)
- [Commits](gevent/gevent@26.5.0...26.7.0)

Updates `prometheus-client` from 0.25.0 to 0.26.0
- [Release notes](https://github.com/prometheus/client_python/releases)
- [Commits](prometheus/client_python@v0.25.0...v0.26.0)

Updates `mypy` from 2.2.0 to 2.3.0
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](python/mypy@v2.2.0...v2.3.0)

---
updated-dependencies:
- dependency-name: qiskit
  dependency-version: 2.5.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: quantum-ml-deps
- dependency-name: pandas
  dependency-version: 3.0.5
  dependency-type: direct:production
  dependency-group: quantum-ml-deps
- dependency-name: matplotlib
  dependency-version: 3.11.1
  dependency-type: direct:production
  dependency-group: quantum-ml-deps
- dependency-name: mcp
  dependency-version: 2.0.0
  dependency-type: direct:production
  dependency-group: quantum-ml-deps
- dependency-name: anyio
  dependency-version: 4.14.2
  dependency-type: direct:production
  dependency-group: quantum-ml-deps
- dependency-name: gevent
  dependency-version: 26.7.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: quantum-ml-deps
- dependency-name: prometheus-client
  dependency-version: 0.26.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: quantum-ml-deps
- dependency-name: mypy
  dependency-version: 2.3.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: quantum-ml-deps
...

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dependabot Bot requested a review from Bryan-Roe as a code owner July 29, 2026 04:11
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ℹ️ This Dependabot update was not auto-merged (production dependency or non-trivial change). Manual review requested.

bryan-roe-bot[bot]
bryan-roe-bot Bot reviewed Jul 29, 2026
View reviewed changes
Comment thread ai-projects/llm-maker/WEBSITE_MAKER_README.md

# Use specific provider
maker = WebsiteMaker(provider_name='azure') # or 'openai', 'local'
maker = WebsiteMaker(provider_name="azure") # or 'openai', 'local'

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Semgrep identified an issue in your code:
Possibly found usage of AI: OpenAI

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@github-actions github-actions Bot added documentation Improvements or additions to documentation training labels Jul 30, 2026
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Looks like these dependencies are updatable in another way, so this is no longer needed.

@dependabot dependabot Bot closed this Jul 31, 2026
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dependabot Bot deleted the dependabot/pip/ai-projects/quantum-ml/quantum-ml-deps-96a84d291a branch July 31, 2026 04:11
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🔐 CodeQL — Open Alerts on this PR

Severity Count
medium 57
high 95
error 109
warning 85
note 701

Copilot Autofix suggestions (if enabled) appear as inline review comments on the affected lines.
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