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Add multi-file prediction ensemble analysis - #23

Merged

CedricHermansBIT merged 34 commits into

mainfrom

feature/prediction-ensemble

Oct 6, 2026

Commits on Oct 6, 2026

Generalize ensemble summaries for prediction confidence and Rama8000
CedricHermansBIT
committed
bee6401
Test prediction confidence and Rama8000 ensemble summaries
CedricHermansBIT
committed
58ef909
Summarize prediction ensemble models and shared residue coverage
CedricHermansBIT
committed
16add9a
Add prediction ensemble controls to Summary workflow
CedricHermansBIT
committed
837e2d6
Do not silently include AlphaFold 3 in prediction ensembles
CedricHermansBIT
committed
6652f48
Analyse uploaded prediction ensembles and expose residue variability
CedricHermansBIT
committed
b0a04d1
Link prediction variability map to residue inspection
CedricHermansBIT
committed
dfc3979
Style prediction ensemble workflow and variability map
CedricHermansBIT
committed
058bd0e
Test multi-file prediction ensemble aggregation
CedricHermansBIT
committed
6b8dcc5
Exercise multi-file prediction ensemble in live browser
CedricHermansBIT
committed
e260c31
Fix comparison header browser assertion
CedricHermansBIT
committed
e181a94
Preserve prediction ensemble hashes and reject duplicate models
CedricHermansBIT
committed
4aa2ed8
Document prediction ensemble capability in README
CedricHermansBIT
committed
7846621
Document prediction ensemble analysis and interpretation
CedricHermansBIT
committed
ddcde20
Make prediction ensemble summary robust to masked statistics
CedricHermansBIT
committed
1002660
Allow practical multi-file prediction ensemble uploads
CedricHermansBIT
committed
f543b67
Document prediction ensemble inspection workflow
CedricHermansBIT
committed
8bbbe23
Use multi-element Puppeteer evaluation for comparison headers
CedricHermansBIT
committed
12d5d25
Evaluate comparison headers as a node collection
CedricHermansBIT
committed
bcf4531
Assign ensemble test confidence and validation by residue identity
CedricHermansBIT
committed
3f67cad
Merge main after Rama8000 integration
CedricHermansBIT
committed
3140f07
Merge README.md with conformational-change explorer
CedricHermansBIT
committed
54d1729
Merge docs/inspection-user-guide.md with conformational-change explorer
CedricHermansBIT
committed
43ec1f5
Merge shinyRam/app.R with conformational-change explorer
CedricHermansBIT
committed
e7cd315
Merge shinyRam/www/custom.js with conformational-change explorer
CedricHermansBIT
committed
cc83438
Merge shinyRam/www/styles.css with conformational-change explorer
CedricHermansBIT
committed
4f479a9
Merge conformational change explorer into prediction ensemble
CedricHermansBIT
committed
09c2dee
Sync conformational comparison calculations from main
CedricHermansBIT
committed
4a1716b
Sync conformational comparison regression tests from main
CedricHermansBIT
committed
2d4ba2c
Restore main comparison browser coverage on prediction ensemble branch
CedricHermansBIT
committed
1147760
Enforce 2 to 30 prediction ensemble bounds
CedricHermansBIT
committed
d85953a
Fix prediction ensemble cache and provenance handling
CedricHermansBIT
committed
64adf48
Test prediction ensemble model bounds
CedricHermansBIT
committed
3dc19d9
Assert nonzero prediction confidence disagreement
CedricHermansBIT
committed
b220a16

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Add multi-file prediction ensemble analysis - #23

Add multi-file prediction ensemble analysis#23
CedricHermansBIT merged 34 commits into
mainfrom
feature/prediction-ensemble

Commits on Oct 6, 2026

Generalize ensemble summaries for prediction confidence and Rama8000

Test prediction confidence and Rama8000 ensemble summaries

Summarize prediction ensemble models and shared residue coverage

Add prediction ensemble controls to Summary workflow

Do not silently include AlphaFold 3 in prediction ensembles

Analyse uploaded prediction ensembles and expose residue variability

Link prediction variability map to residue inspection

Style prediction ensemble workflow and variability map

Test multi-file prediction ensemble aggregation

Exercise multi-file prediction ensemble in live browser

Fix comparison header browser assertion

Preserve prediction ensemble hashes and reject duplicate models

Document prediction ensemble capability in README

Document prediction ensemble analysis and interpretation

Make prediction ensemble summary robust to masked statistics

Allow practical multi-file prediction ensemble uploads

Document prediction ensemble inspection workflow

Use multi-element Puppeteer evaluation for comparison headers

Evaluate comparison headers as a node collection

Assign ensemble test confidence and validation by residue identity

Merge main after Rama8000 integration

Merge README.md with conformational-change explorer

Merge docs/inspection-user-guide.md with conformational-change explorer

Merge shinyRam/app.R with conformational-change explorer

Merge shinyRam/www/custom.js with conformational-change explorer

Merge shinyRam/www/styles.css with conformational-change explorer

Merge conformational change explorer into prediction ensemble

Sync conformational comparison calculations from main

Sync conformational comparison regression tests from main

Restore main comparison browser coverage on prediction ensemble branch

Enforce 2 to 30 prediction ensemble bounds

Fix prediction ensemble cache and provenance handling

Test prediction ensemble model bounds

Assert nonzero prediction confidence disagreement