Installation error ‘is_vector_s3’ is not exported by 'namespace:tibble'

[anamariaelek]

Hi,

when trying to instal the package with devtools::install_github("ctlab/gatom"), I get the following error:

* installing *source* package ‘gatom’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** tests
** byte-compile and prepare package for lazy loading
Error : object ‘is_vector_s3’ is not exported by 'namespace:tibble'

I have both sgmwcs solver and cplex solver in PATH, and here's session info:

R version 3.5.0 (2018-04-23)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Scientific Linux 7.2 (Nitrogen)

Matrix products: default
BLAS/LAPACK: /nfs/software/as/el7.2/EasyBuild/CRG/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib/libopenblas_sandybridgep-r0.2.20.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
 [1] httr_1.3.1           compiler_3.5.0       R6_2.4.1
 [4] BiocInstaller_1.30.0 tools_3.5.0          withr_2.2.0
 [7] curl_3.1             memoise_1.1.0        knitr_1.20
[10] git2r_0.21.0         digest_0.6.25        devtools_1.13.5

Any suggestions what could be wrong?
Thanks in advance,
Anamaria

[assaron]

That looks like there is some problem with depencies. Can you try to update tibble, plyr, pryr and readr packages first?

[anamariaelek]

I think I have the latest versions of all those:

> packageVersion("tibble")
[1] ‘3.0.3’
> packageVersion("plyr")
[1] ‘1.8.6’
> packageVersion("pryr")
[1] ‘0.1.4’
> packageVersion("readr")
[1] ‘1.3.1’

Quick web search returns this issue for the offending function, maybe it helps:
r-lib/pillar#181

[assaron]

Quick web search returns this issue for the offending function, maybe it helps

This function is not used in gatom package, so the problem lays somewhere else. You devtools seems to be pretty old, can you update it?

[anamariaelek]

That solved it, thank you!