From 7f42ea17ebce6058d60c53cfdd35d46a7a1e719d Mon Sep 17 00:00:00 2001
From: Juan Carlos Graciosa <juan.graciosa@monash.edu>
Date: Wed, 8 Jul 2026 14:37:02 +1000
Subject: [PATCH] fix(container): bump environment.yaml dependencies to match
 pixi.toml
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- petsc/petsc4py 3.21.5 → 3.24 (fixes build failure from PR #242 PETSc API change)
- python <=3.11 → 3.12.*
- numpy <2 → >=2,<2.5
- trame 2.x → >=3.8,<4
- Added upper bounds to scipy, sympy, pint, pydantic, typeguard, pyyaml,
  pytest, mpi4py, jupyterlab, ipywidgets, trame-vtk, trame-vuetify, jupytext
- Closes #355

Underworld development team with AI support from [Claude Code](https://claude.com/claude-code)
---
 environment.yaml | 52 ++++++++++++++++++++++++------------------------
 1 file changed, 26 insertions(+), 26 deletions(-)

diff --git a/environment.yaml b/environment.yaml
index 5fabb5b0..ed832731 100644
--- a/environment.yaml
+++ b/environment.yaml
@@ -2,46 +2,46 @@ name: uw3
 channels:
   - conda-forge
 dependencies:
-  - python <= 3.11
+  - python=3.12.*
   - compilers
   - mpich
-  - petsc=3.21.5
-  - petsc4py=3.21.5
-  - cython=3.*
+  - petsc=3.24
+  - petsc4py=3.24
+  - cython>=3.1,<4
   - mpmath<=1.3
   - mesalib
-  - pyvista
+  - pyvista>=0.46,<0.47
   - pykdtree
-  - pytest
-  - pytest-mpi
-  - numpy<2
-  - scipy>=1.15
-  - sympy>=1.13
+  - pytest>=8.3,<9
+  - pytest-mpi>=0.6,<0.7
+  - numpy>=2,<2.5
+  - scipy>=1.15,<2
+  - sympy>=1.13,<2
   - ipython
-  - mpi4py
+  - mpi4py>=4,<5
   - h5py=*=mpi*
   - gmsh
   - python-gmsh
-  - python-xxhash
-  - jupytext
+  - python-xxhash>=3.0
+  - jupytext>=1.16,<2
   - pygments
-  - pint>=0.24
+  - pint>=0.24,<0.25
   - cmocean
   - colorcet
   - imageio
   - imageio-ffmpeg
-  - ipywidgets<9.0.0
-  - jupyter-server-proxy
-  - jupyterlab<5.0.0
-  - trame>=2.5.2
-  - trame-vtk>=2.5.8
-  - trame-vuetify>=2.3.1
+  - ipywidgets>=8.1,<9
+  - jupyter-server-proxy>=4,<5
+  - jupyterlab>=4.3,<5
+  - trame>=3.8,<4
+  - trame-vtk>=2.8,<3
+  - trame-vuetify>=2.8,<3
   - trimesh
-  - typeguard
-  - pydantic>=2
-  - pyyaml
+  - typeguard>=4.4,<5
+  - pydantic>=2.0,<3
+  - pyyaml>=6.0,<7
   - pip
   - pip:
-      - rich<14
-      - meshio
-      - pygmsh
+      - rich
+      - meshio>=5.3,<6
+      - pygmsh>=7.1,<8