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Speedups#291

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TeunHuijben wants to merge 3 commits into
royerlab:mainfrom
TeunHuijben:speedups
Open

Speedups#291
TeunHuijben wants to merge 3 commits into
royerlab:mainfrom
TeunHuijben:speedups

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@TeunHuijben

@TeunHuijben TeunHuijben commented May 1, 2026

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Two perf fixes in GraphView, both on hot paths used by interactive editing
(BBoxSpatialFilter, GraphArrayView).

  • remove_node: replaced O(E²) bookkeeping cleanup with an O(degree) capture
    of incident edges before the node is removed. Measured on a 2000-node /
    density-5 view, 50 deletions: 52s → 2ms (~22000×).

  • update_node_attrs: when a listener is attached, the signal payload used to
    require two queries to root (old attrs + new attrs). The new attrs are now
    derived by overlaying the applied attrs onto old_attrs, saving one
    query. ~3-6× on small interactive batches with SQL backend; neutral
    otherwise.

  • Adds a benchmark for the listener-attached update_node_attrs path so the
    gain is visible in ASV comparisons going forward.

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Codecov Report

❌ Patch coverage is 90.90909% with 1 line in your changes missing coverage. Please review.
✅ Project coverage is 87.73%. Comparing base (14b92ec) to head (5138caa).

Files with missing lines Patch % Lines
src/tracksdata/graph/_graph_view.py 90.90% 0 Missing and 1 partial ⚠️
Additional details and impacted files
@@           Coverage Diff           @@
##             main     #291   +/-   ##
=======================================
  Coverage   87.73%   87.73%           
=======================================
  Files          57       57           
  Lines        4890     4892    +2     
  Branches      862      862           
=======================================
+ Hits         4290     4292    +2     
  Misses        378      378           
  Partials      222      222           

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@TeunHuijben TeunHuijben marked this pull request as ready for review May 1, 2026 22:55
@TeunHuijben TeunHuijben requested a review from JoOkuma May 1, 2026 22:55

@JoOkuma JoOkuma left a comment

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Hi @TeunHuijben, thanks for the PR, very minor comment, everything else looks Ok.

for i, node_id in enumerate(node_ids):
new_attrs = dict(old_attrs_by_id[node_id])
for k, v in attrs.items():
if k in new_attrs:

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Hi, is if k in new_attrs necessary?

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3 participants