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Amend ID assignment #209

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@amyheather

When developing ambdes, ran into a bug that was caused by me assuming all patients had unique ID, but actually I was allowing same ID in warm-up and data-collection period.

Although I don't think this causes issues here, so not technically a bug, it is better for these to be unique here, so should implement the same fix (i.e., add patient_id_counter).

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