From ffcefee5fd16509820775faf2d92e7ba842f4e6c Mon Sep 17 00:00:00 2001 From: Dony Unardi Date: Fri, 26 Jun 2026 18:43:52 -0700 Subject: [PATCH 1/4] [skip vbump] upversion 0.7.2 --- DESCRIPTION | 7 ++++--- NEWS.md | 8 +++++++- 2 files changed, 11 insertions(+), 4 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 2005a70e..0957969f 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,9 +1,10 @@ Package: teal.transform Title: Functions for Extracting and Merging Data in the 'teal' Framework -Version: 0.7.1.9003 -Date: 2026-02-17 +Version: 0.7.2 +Date: 2026-06-26 Authors@R: c( - person("Dawid", "Kaledkowski", , "dawid.kaledkowski@roche.com", role = c("aut", "cre")), + person("Dawid", "Kaledkowski", , "dawid.kaledkowski@roche.com", role = "aut"), + person("Dony", "Unardi", , "unardid@gene.com", role = c("rev", "cre")), person("Pawel", "Rucki", , "pawel.rucki@roche.com", role = "aut"), person("Mahmoud", "Hallal", , "mahmoud.hallal@roche.com", role = "aut"), person("Nikolas", "Burkoff", role = "aut"), diff --git a/NEWS.md b/NEWS.md index d6dd1d33..4ebaf0b1 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,10 @@ -# teal.transform 0.7.1.9003 +# teal.transform 0.7.2 + +### Miscellaneous + +* Update maintainer. + +# teal.transform 0.7.1 ### Miscellaneous From b886a99f659ae5a2013c9304d5bcc64419edcae8 Mon Sep 17 00:00:00 2001 From: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Date: Sat, 27 Jun 2026 01:53:34 +0000 Subject: [PATCH 2/4] [skip roxygen] [skip vbump] Roxygen Man Pages Auto Update --- DESCRIPTION | 2 +- man/Queue.Rd | 216 ++++++++++++++++++---------------- man/data_extract_ui.Rd | 2 +- man/reexports.Rd | 2 +- man/teal.transform-package.Rd | 3 +- 5 files changed, 121 insertions(+), 104 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 0957969f..b1e9cfce 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -59,4 +59,4 @@ Encoding: UTF-8 Language: en-US LazyData: true Roxygen: list(markdown = TRUE) -RoxygenNote: 7.3.3 +Config/roxygen2/version: 8.0.0 diff --git a/man/Queue.Rd b/man/Queue.Rd index b2372900..2c489138 100644 --- a/man/Queue.Rd +++ b/man/Queue.Rd @@ -16,146 +16,162 @@ Elements are returned in the same order that they were added. \keyword{internal} \section{Methods}{ \subsection{Public methods}{ -\itemize{ -\item \href{#method-Queue-push}{\code{Queue$push()}} -\item \href{#method-Queue-get}{\code{Queue$get()}} -\item \href{#method-Queue-pop}{\code{Queue$pop()}} -\item \href{#method-Queue-remove}{\code{Queue$remove()}} -\item \href{#method-Queue-empty}{\code{Queue$empty()}} -\item \href{#method-Queue-size}{\code{Queue$size()}} -\item \href{#method-Queue-print}{\code{Queue$print()}} -\item \href{#method-Queue-clone}{\code{Queue$clone()}} -} + \itemize{ + \item \href{#method-Queue-push}{\code{Queue$push()}} + \item \href{#method-Queue-get}{\code{Queue$get()}} + \item \href{#method-Queue-pop}{\code{Queue$pop()}} + \item \href{#method-Queue-remove}{\code{Queue$remove()}} + \item \href{#method-Queue-empty}{\code{Queue$empty()}} + \item \href{#method-Queue-size}{\code{Queue$size()}} + \item \href{#method-Queue-print}{\code{Queue$print()}} + \item \href{#method-Queue-clone}{\code{Queue$clone()}} + } } \if{html}{\out{
}} \if{html}{\out{}} \if{latex}{\out{\hypertarget{method-Queue-push}{}}} -\subsection{Method \code{push()}}{ -Adds element(s) to \code{Queue}. -\subsection{Usage}{ -\if{html}{\out{
}}\preformatted{Queue$push(new_elements)}\if{html}{\out{
}} +\subsection{\code{Queue$push()}}{ + Adds element(s) to \code{Queue}. + \subsection{Usage}{ + \if{html}{\out{
}} + \preformatted{Queue$push(new_elements)} + \if{html}{\out{
}} + } + \subsection{Arguments}{ + \if{html}{\out{
}} + \describe{ + \item{\code{new_elements}}{vector of elements to add.} + } + \if{html}{\out{
}} + } + \subsection{Returns}{ + \code{self}, invisibly. + } } -\subsection{Arguments}{ -\if{html}{\out{
}} -\describe{ -\item{\code{new_elements}}{vector of elements to add.} -} -\if{html}{\out{
}} -} -\subsection{Returns}{ -\code{self}, invisibly. -} -} \if{html}{\out{
}} \if{html}{\out{}} \if{latex}{\out{\hypertarget{method-Queue-get}{}}} -\subsection{Method \code{get()}}{ -Returns all contents of the \code{Queue} object. -\subsection{Usage}{ -\if{html}{\out{
}}\preformatted{Queue$get()}\if{html}{\out{
}} +\subsection{\code{Queue$get()}}{ + Returns all contents of the \code{Queue} object. + \subsection{Usage}{ + \if{html}{\out{
}} + \preformatted{Queue$get()} + \if{html}{\out{
}} + } + \subsection{Returns}{ + Single vector containing all \code{Queue} contents. + } } -\subsection{Returns}{ -Single vector containing all \code{Queue} contents. -} -} \if{html}{\out{
}} \if{html}{\out{}} \if{latex}{\out{\hypertarget{method-Queue-pop}{}}} -\subsection{Method \code{pop()}}{ -Returns the first (oldest) element of the \code{Queue} and removes it. -\subsection{Usage}{ -\if{html}{\out{
}}\preformatted{Queue$pop()}\if{html}{\out{
}} -} - -\subsection{Returns}{ -vector of length 1 containing the first element of \code{Queue} +\subsection{\code{Queue$pop()}}{ + Returns the first (oldest) element of the \code{Queue} and removes it. + \subsection{Usage}{ + \if{html}{\out{
}} + \preformatted{Queue$pop()} + \if{html}{\out{
}} + } + \subsection{Returns}{ + vector of length 1 containing the first element of \code{Queue} or \code{NULL} if \code{Queue} is empty. + } } -} + \if{html}{\out{
}} \if{html}{\out{}} \if{latex}{\out{\hypertarget{method-Queue-remove}{}}} -\subsection{Method \code{remove()}}{ -Removes the oldest occurrence of specified element(s) from \code{Queue}. +\subsection{\code{Queue$remove()}}{ + Removes the oldest occurrence of specified element(s) from \code{Queue}. Relies on implicit type conversions of R identify elements to remove. -\subsection{Usage}{ -\if{html}{\out{
}}\preformatted{Queue$remove(elements)}\if{html}{\out{
}} + \subsection{Usage}{ + \if{html}{\out{
}} + \preformatted{Queue$remove(elements)} + \if{html}{\out{
}} + } + \subsection{Arguments}{ + \if{html}{\out{
}} + \describe{ + \item{\code{elements}}{vector of elements to remove from \code{Queue}.} + } + \if{html}{\out{
}} + } + \subsection{Returns}{ + \code{self}, invisibly. + } } -\subsection{Arguments}{ -\if{html}{\out{
}} -\describe{ -\item{\code{elements}}{vector of elements to remove from \code{Queue}.} -} -\if{html}{\out{
}} -} -\subsection{Returns}{ -\code{self}, invisibly. -} -} \if{html}{\out{
}} \if{html}{\out{}} \if{latex}{\out{\hypertarget{method-Queue-empty}{}}} -\subsection{Method \code{empty()}}{ -Removes all elements from \code{Queue}. -\subsection{Usage}{ -\if{html}{\out{
}}\preformatted{Queue$empty()}\if{html}{\out{
}} +\subsection{\code{Queue$empty()}}{ + Removes all elements from \code{Queue}. + \subsection{Usage}{ + \if{html}{\out{
}} + \preformatted{Queue$empty()} + \if{html}{\out{
}} + } + \subsection{Returns}{ + \code{self}, invisibly. + } } -\subsection{Returns}{ -\code{self}, invisibly. -} -} \if{html}{\out{
}} \if{html}{\out{}} \if{latex}{\out{\hypertarget{method-Queue-size}{}}} -\subsection{Method \code{size()}}{ -Returns the number of elements in \code{Queue}. -\subsection{Usage}{ -\if{html}{\out{
}}\preformatted{Queue$size()}\if{html}{\out{
}} +\subsection{\code{Queue$size()}}{ + Returns the number of elements in \code{Queue}. + \subsection{Usage}{ + \if{html}{\out{
}} + \preformatted{Queue$size()} + \if{html}{\out{
}} + } + \subsection{Returns}{ + \code{integer(1)}. + } } -\subsection{Returns}{ -\code{integer(1)}. -} -} \if{html}{\out{
}} \if{html}{\out{}} \if{latex}{\out{\hypertarget{method-Queue-print}{}}} -\subsection{Method \code{print()}}{ -Prints this \code{Queue}. -\subsection{Usage}{ -\if{html}{\out{
}}\preformatted{Queue$print(...)}\if{html}{\out{
}} +\subsection{\code{Queue$print()}}{ + Prints this \code{Queue}. + \subsection{Usage}{ + \if{html}{\out{
}} + \preformatted{Queue$print(...)} + \if{html}{\out{
}} + } + \subsection{Arguments}{ + \if{html}{\out{
}} + \describe{ + \item{\code{...}}{Additional arguments to this method, ignored.} + } + \if{html}{\out{
}} + } + \subsection{Returns}{ + \code{self}, invisibly. + } } -\subsection{Arguments}{ -\if{html}{\out{
}} -\describe{ -\item{\code{...}}{Additional arguments to this method, ignored.} -} -\if{html}{\out{
}} -} -\subsection{Returns}{ -\code{self}, invisibly. -} -} \if{html}{\out{
}} \if{html}{\out{}} \if{latex}{\out{\hypertarget{method-Queue-clone}{}}} -\subsection{Method \code{clone()}}{ -The objects of this class are cloneable with this method. -\subsection{Usage}{ -\if{html}{\out{
}}\preformatted{Queue$clone(deep = FALSE)}\if{html}{\out{
}} +\subsection{\code{Queue$clone()}}{ + The objects of this class are cloneable with this method. + \subsection{Usage}{ + \if{html}{\out{
}} + \preformatted{Queue$clone(deep = FALSE)} + \if{html}{\out{
}} + } + \subsection{Arguments}{ + \if{html}{\out{
}} + \describe{ + \item{\code{deep}}{Whether to make a deep clone.} + } + \if{html}{\out{
}} + } } -\subsection{Arguments}{ -\if{html}{\out{
}} -\describe{ -\item{\code{deep}}{Whether to make a deep clone.} -} -\if{html}{\out{
}} -} -} } diff --git a/man/data_extract_ui.Rd b/man/data_extract_ui.Rd index bd47c911..9e581c09 100644 --- a/man/data_extract_ui.Rd +++ b/man/data_extract_ui.Rd @@ -18,7 +18,7 @@ This is the outcome of listing \code{\link[=data_extract_spec]{data_extract_spec } \value{ Shiny \code{\link[shiny:selectInput]{shiny::selectInput}}\code{s} that allow to define how to extract data from -a specific dataset. The input elements will be returned inside a \link[shiny:reexports]{shiny::div} container. +a specific dataset. The input elements will be returned inside a \link[shiny:div]{shiny::div} container. } \description{ Data extraction module. diff --git a/man/reexports.Rd b/man/reexports.Rd index 4a4a50fd..34122e0d 100644 --- a/man/reexports.Rd +++ b/man/reexports.Rd @@ -11,6 +11,6 @@ These objects are imported from other packages. Follow the links below to see their documentation. \describe{ - \item{dplyr}{\code{\link[dplyr:reexports]{\%>\%}}} + \item{dplyr}{\code{\link[dplyr:\%>\%]{\%>\%}}} }} diff --git a/man/teal.transform-package.Rd b/man/teal.transform-package.Rd index 85a9dc90..0ec64a96 100644 --- a/man/teal.transform-package.Rd +++ b/man/teal.transform-package.Rd @@ -18,10 +18,11 @@ Useful links: } \author{ -\strong{Maintainer}: Dawid Kaledkowski \email{dawid.kaledkowski@roche.com} +\strong{Maintainer}: Dony Unardi \email{unardid@gene.com} [reviewer] Authors: \itemize{ + \item Dawid Kaledkowski \email{dawid.kaledkowski@roche.com} \item Pawel Rucki \email{pawel.rucki@roche.com} \item Mahmoud Hallal \email{mahmoud.hallal@roche.com} \item Nikolas Burkoff From f8e7ce2de354f4586e5f46c24184668be40004b2 Mon Sep 17 00:00:00 2001 From: Dony Unardi Date: Fri, 26 Jun 2026 19:16:51 -0700 Subject: [PATCH 3/4] empty From 495bfe22cfd083c0109f0bb900dbbc4f2971ce19 Mon Sep 17 00:00:00 2001 From: Dony Unardi Date: Sat, 27 Jun 2026 05:06:37 -0700 Subject: [PATCH 4/4] remove stargazer and forker section --- README.md | 14 -------------- 1 file changed, 14 deletions(-) diff --git a/README.md b/README.md index 6648c87a..fdeefaf1 100644 --- a/README.md +++ b/README.md @@ -72,17 +72,3 @@ shinyApp(ui, server) ## Getting help If you encounter a bug or have a feature request, please file an issue. For questions, discussions, and staying up to date, please use the `teal` channel in the [`pharmaverse` slack workspace](https://pharmaverse.slack.com). - -## Stargazers and Forkers - -### Stargazers over time - -[![Stargazers over time](https://starchart.cc/insightsengineering/teal.transform.svg)](https://starchart.cc/insightsengineering/teal.transform) - -### Stargazers - -[![Stargazers repo roster for @insightsengineering/teal.transform](http://reporoster.com/stars/insightsengineering/teal.transform)](https://github.com/insightsengineering/teal.transform/stargazers) - -### Forkers - -[![Forkers repo roster for @insightsengineering/teal.transform](http://reporoster.com/forks/insightsengineering/teal.transform)](https://github.com/insightsengineering/teal.transform/network/members)