mkdocs.yml

site_name: Phables
site_url: "https://github.com/Vini2/phables"
site_author: "Vijini Mallawaarachchi"
repo_url: "https://github.com/Vini2/phables"
repo_name: 'GitHub'
theme:
    name: readthedocs
    highlightjs: true
    hljs_languages:
        - yaml
        - bash
        - shell
        - text
nav:
    - HOME:
        - Introduction: index.md
        - Citation: citation.md
    - RUNNING:
        - Install: install.md
        - Assemble: assemble.md
        - Usage: usage.md
        - Building the hallmark database: hallmark_db.md
        - Running from a single container: container.md
        - FAQ: faq.md
    - EVALUATION:
        - Running CheckV: quality.md
        - Quality comparison: comparison.md
        - Annotation with pharokka: annotation.md
        - Graph statistics: graph_stats.md